Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65820 207 / 5e-70 microsomal glutathione s-transferase, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020793 [exp] 246 / 2e-85 AT1G65820 218 / 3e-74 microsomal glutathione s-transferase, putative (.1.2.3) Lus10007375 [exp] 235 / 6e-81 AT1G65820 222 / 7e-76 microsomal glutathione s-transferase, putative (.1.2.3) Lus10020792 [exp] 220 / 1e-74 AT1G65820 171 / 1e-55 microsomal glutathione s-transferase, putative (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G140900 [exp] 207 / 1e-69 AT1G65820 217 / 1e-73 microsomal glutathione s-transferase, putative (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01124 [flax] [poplar] MAPEG MAPEG family
Representative CDS sequence Show only first row Show all	>Lus10007373 pacid=23166213 polypeptide=Lus10007373 locus=Lus10007373.g ID=Lus10007373.BGIv1.0 annot-version=v1.0 ATGGCCGCCGGCGCCGGAGTTACAGAATTGCTGCCCAAGGAGTACGGCTACGTGGCTCTAGTGGTAGTGGCCTGTCGCTTGCTGAGTTTTTACATGGCAC GCAAGGTCGTCAGGGCTCGTATGAAATACAACGTCCCTTATCCCACTCTCTACGCAATTGAATCAGAGAACAAACACGCTAAGCTCTTCAACTGCGTACA GAGAGGGCACCAGAATTCGCTGGAATTGATGCCGATGTTCTTCATGCTGATCGCGTTGGGAGGATTGAGGCATCCCTGCGTCGCCGCCGCTCTCGGAGCG TTCTTCGTCGTGACTCGTTACTTCTATTTCACCGGCTACTCCACCGGAGATCCCAAGAATCGCCTCCCCATAGGTAAATACGGGTTCTTGTCCCTCTTTG GGCTAATGGGTTGCACTATTTCCCTCGGCATCACCCTCCTACGAGCATAG
AA sequence Show only first row Show all	>Lus10007373 pacid=23166213 polypeptide=Lus10007373 locus=Lus10007373.g ID=Lus10007373.BGIv1.0 annot-version=v1.0 MAAGAGVTELLPKEYGYVALVVVACRLLSFYMARKVVRARMKYNVPYPTLYAIESENKHAKLFNCVQRGHQNSLELMPMFFMLIALGGLRHPCVAAALGA FFVVTRYFYFTGYSTGDPKNRLPIGKYGFLSLFGLMGCTISLGITLLRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65820			microsomal glutathione s-trans...		Lus10007373 [exp]	0	1
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10035570 [exp]	5.5	0.7571
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032561 [exp]	6.9	0.7555
AT5G19090			Heavy metal transport/detoxifi...		Lus10029942 [exp]	9.8	0.6947
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10027718 [exp]	17.9	0.7343
AT4G05400			copper ion binding (.1.2)		Lus10035454 [exp]	18.8	0.7254
AT2G24580			FAD-dependent oxidoreductase f...		Lus10026231 [exp]	20.9	0.7484
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Lus10027064 [exp]	25.8	0.7296
					Lus10023658 [exp]	26.4	0.6348
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10023159 [exp]	28.5	0.7082
AT2G15220			Plant basic secretory protein ...		Lus10038602 [exp]	32.9	0.6481

Compare expression of checked genes

Lus10007373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.