Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09990 109 / 2e-30 Protein of unknown function (DUF579) (.1) AT1G33800 100 / 4e-27 Protein of unknown function (DUF579) (.1) AT1G09610 98 / 4e-26 Protein of unknown function (DUF579) (.1) AT1G71690 87 / 6e-22 Protein of unknown function (DUF579) (.1) AT1G67330 70 / 2e-15 Protein of unknown function (DUF579) (.1) AT1G27930 70 / 2e-15 Protein of unknown function (DUF579) (.1) AT2G15440 63 / 6e-13 Protein of unknown function (DUF579) (.1) AT3G50220 61 / 3e-12 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT5G67210 54 / 7e-10 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005829 [exp] 154 / 6e-48 AT4G09990 360 / 8e-126 Protein of unknown function (DUF579) (.1) Lus10005822 [exp] 153 / 2e-47 AT4G09990 360 / 6e-126 Protein of unknown function (DUF579) (.1) Lus10002954 [exp] 82 / 4e-20 AT4G09990 298 / 1e-101 Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 62 / 2e-12 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10027879 [exp] 61 / 4e-12 AT5G67210 299 / 2e-101 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 61 / 5e-12 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10037026 [exp] 61 / 5e-12 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10006415 [exp] 60 / 9e-12 AT1G67330 368 / 1e-128 Protein of unknown function (DUF579) (.1) Lus10011360 [exp] 58 / 3e-11 AT1G67330 350 / 1e-121 Protein of unknown function (DUF579) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102200 [exp] 125 / 2e-36 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 118 / 1e-33 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 99 / 3e-26 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 96 / 2e-25 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 64 / 4e-13 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.001G302600 [exp] 63 / 5e-13 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 61 / 2e-12 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.003G172300 [exp] 61 / 3e-12 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 54 / 1e-09 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.005G141300 [exp] 52 / 3e-09 AT5G67210 405 / 1e-142 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [flax] [poplar] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10007374 pacid=23166219 polypeptide=Lus10007374 locus=Lus10007374.g ID=Lus10007374.BGIv1.0 annot-version=v1.0 ATGGAGAAGGTCCTCGCGGATATCCCTTCCTTGAAGGCCTACCACATCAGCTACAACACTAAGGTCCACCAAGTTGGCGGTCTTATGGAGGCCGGAATCG CAGACGAAGATTGCAAGGCGGTTTCCGATCCAAGAGAATCCAAGTGTCGATTGGGCCTCAAAGGGTTTCCAGCGGAGATCTACGAGATGGATTGGGATCT GATCATGGTGGACGCTCCTGCCAGGTACCACGACAAGGCTCTCGAGAGGATGCCGGCGATAGAGCAGGAAGGGAGGTTGCCGGTGGCGGAATTAGAGTTG GCTTGA
AA sequence Show only first row Show all	>Lus10007374 pacid=23166219 polypeptide=Lus10007374 locus=Lus10007374.g ID=Lus10007374.BGIv1.0 annot-version=v1.0 MEKVLADIPSLKAYHISYNTKVHQVGGLMEAGIADEDCKAVSDPRESKCRLGLKGFPAEIYEMDWDLIMVDAPARYHDKALERMPAIEQEGRLPVAELEL A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09990			Protein of unknown function (D...		Lus10007374 [exp]	0	1
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10015748 [exp]	4.0	0.6228
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Lus10000717 [exp]	14.9	0.6337
					Lus10016844 [exp]	21.7	0.5916
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	23.0	0.6089
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10035637 [exp]	30.3	0.5937
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10022696 [exp]	32.9	0.5459
					Lus10019981 [exp]	41.2	0.5876
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	42.6	0.5919
AT1G16760			Protein kinase protein with ad...		Lus10033340 [exp]	43.2	0.5709
AT1G72200			RING/U-box superfamily protein...		Lus10036466 [exp]	56.2	0.5664

Compare expression of checked genes

Lus10007374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.