Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10360 389 / 2e-138 RPS6B, EMB3010 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) AT4G31700 387 / 6e-138 RPS6A, RPS6 ribosomal protein S6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031021 [exp] 421 / 4e-151 AT5G10360 448 / 4e-162 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10027260 [exp] 420 / 1e-150 AT5G10360 448 / 8e-162 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10035414 [exp] 417 / 1e-148 AT5G10360 446 / 5e-160 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10020794 [exp] 423 / 4e-143 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G072700 [exp] 405 / 5e-145 AT5G10360 416 / 2e-149 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.007G096300 [exp] 404 / 2e-144 AT5G10360 417 / 2e-149 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.005G162600 [exp] 404 / 2e-144 AT5G10360 419 / 1e-150 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.001G311000 [exp] 402 / 9e-144 AT5G10360 421 / 3e-151 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.002G099500 [exp] 395 / 3e-141 AT5G10360 413 / 6e-148 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01092 [flax] [poplar] Ribosomal_S6e Ribosomal protein S6e
Representative CDS sequence Show only first row Show all	>Lus10007376 pacid=23166212 polypeptide=Lus10007376 locus=Lus10007376.g ID=Lus10007376.BGIv1.0 annot-version=v1.0 ATGAAGTTCAACATCGCCAACCCCACAACGGGGTGCCAGAAGAAGCTGGAGATCGATGACGACCAGAAGCTGCGTGCCTTTTTTGACAAGAGGATATCCC AGGAAGTCAGTGGTGATGCTCTTGGAGAGGAATTTAAGGGATATGTGTTCAAGATCATGGGAGGATGTGACAAGCAGGGCTTCCCCATGAAGCAGGGAGT CCTGAACCCTGGTCGTGTCCGCCTTTTGCTTACTCGAGGAACCCCGTGCTTCCGTGGATATGGAAGGCGCAATGGTGAGCGAAGAAGGAAGTCTGTCCGG GGTTGCATCGTCAGCCAGGACCTGTCTGTTCTCAACTTGGTCATCGTGAAGAAAGGTGAGAGTGATCTCCCCGGACTGACCGACACAGAGAAGCCAAGAA TGAGAGGACCCAAGAGGGCTTCCAAGATCCGCAAGCTCTTCAATCTCTCCAAAGAGGATGATGTCAGGAAGTACGTGAACACCTACAGAAGAACCTTCAC TGCCAAGAACGGAAAGGAAGTGAGCAAGGCTCCTAAGATTCAGAGGTTGGTAACTCCGGTGACTTTGCAAAGGAAGAGAGCAAGGCTTGCAGAGAAGAAG AGGAGGGTCGAGAAGGCGAACTCTGAGGCTGCCGAATACCAGAAGCTGCTTGCGTCGAGATTGAAAGAACAGAGGGAGCGCCGCAGTGAGAGCTTGGCCA AGAAGAGGTCCAGGTTGTCTACTGCTTCCAAGCCATCCGTCGTCGCCTAA
AA sequence Show only first row Show all	>Lus10007376 pacid=23166212 polypeptide=Lus10007376 locus=Lus10007376.g ID=Lus10007376.BGIv1.0 annot-version=v1.0 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLNPGRVRLLLTRGTPCFRGYGRRNGERRRKSVR GCIVSQDLSVLNLVIVKKGESDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTAKNGKEVSKAPKIQRLVTPVTLQRKRARLAEKK RRVEKANSEAAEYQKLLASRLKEQRERRSESLAKKRSRLSTASKPSVVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10007376 [exp]	0	1
AT3G05560			Ribosomal L22e protein family ...		Lus10006509 [exp]	1.0	0.9531
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10017031 [exp]	2.0	0.8988
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016431 [exp]	2.4	0.8925
AT3G11510			Ribosomal protein S11 family p...		Lus10014220 [exp]	2.8	0.8875
AT3G22660			rRNA processing protein-relate...		Lus10031120 [exp]	3.9	0.8865
AT3G12150			unknown protein		Lus10035501 [exp]	4.2	0.8820
AT3G05560			Ribosomal L22e protein family ...		Lus10037498 [exp]	4.5	0.8665
AT3G44620			protein tyrosine phosphatases;...		Lus10019533 [exp]	4.6	0.8731
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10004648 [exp]	5.2	0.8667
AT3G13230			RNA-binding KH domain-containi...		Lus10027099 [exp]	6.0	0.8350

Compare expression of checked genes

Lus10007376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.