Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65910 404 / 2e-132 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G03200 318 / 2e-101 NAC ANAC045 NAC domain containing protein 45 (.1) AT5G17260 302 / 4e-95 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G17730 284 / 1e-91 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G54330 259 / 6e-81 NAC ANAC020 NAC domain containing protein 20 (.1) AT5G46590 225 / 4e-68 NAC ANAC096 NAC domain containing protein 96 (.1) AT4G17980 220 / 1e-66 NAC ANAC071 NAC domain containing protein 71 (.1) AT1G32510 210 / 1e-62 NAC ANAC011 NAC domain containing protein 11 (.1) AT1G33060 218 / 1e-61 NAC ANAC014 NAC 014 (.1.2) AT3G10490 202 / 3e-60 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020794 [exp] 1117 / 0 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10010959 [exp] 572 / 0 AT1G65910 389 / 9e-128 NAC domain containing protein 28 (.1) Lus10042284 [exp] 281 / 2e-89 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 281 / 3e-89 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10035373 [exp] 231 / 1e-69 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1) Lus10030978 [exp] 229 / 4e-69 AT4G17980 273 / 6e-91 NAC domain containing protein 71 (.1) Lus10010148 [exp] 209 / 5e-59 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10031721 [exp] 201 / 9e-59 AT1G12260 353 / 4e-121 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10028824 [exp] 207 / 1e-58 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G139500 [exp] 556 / 0 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.004G081000 [exp] 525 / 4e-179 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.010G174600 [exp] 294 / 7e-94 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.008G081500 [exp] 286 / 9e-91 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.015G030200 [exp] 275 / 3e-88 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.012G038100 [exp] 268 / 1e-84 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.003G089800 [exp] 234 / 1e-70 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.001G144400 [exp] 232 / 8e-70 AT4G17980 318 / 2e-108 NAC domain containing protein 71 (.1) Potri.002G061300 [exp] 220 / 7e-63 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.010G229900 [exp] 213 / 8e-61 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10007377 pacid=23166218 polypeptide=Lus10007377 locus=Lus10007377.g ID=Lus10007377.BGIv1.0 annot-version=v1.0 ATGGCTCCTGTTTCGTTGCCACCTGGCTTTCGATTCCACCCAACCGACGAGGAGCTGGTTGCTTACTACCTGAAGAGCAAGATCAACGGCCAGAAGATAG AGCTCGAGATCATCCCTGAAGTCGACCTTTACAAGTGCGAGCCCTGGGATTTGCCTGGAAAATCCCTGCTCCCTAGCAAAGATATGGAGTGGTACTTCTT CAGCCCACGAGACCGAAAGTACCCAAACGGATCCAGAACTAACCGAGCCACAAAAACCGGGTACTGGAAGGCTACGGGGAAGGACCGCAAAGTGAACTCC CAGATGCGTTCCGTTGGGATGAAGAAAACCCTAGTCTACTACCGCGGACGTGCACCTCACGGTGCTCGTTCCGATTGGGTCATGCACGAGTATCGCCTCG ACGATCGAGAATGCGACTCCCCAGCTTCTGGCTTACAGGATGCATATGCATTATGTCGGGTGTTCAAGAAGACGGCGGCGCCAACTCCGCCGAAGGTCCA CGTGGAGGGCTACTCGTCTACCATGAACAATCATCATCCGAGTCAGCTCCAGGTGGCGAGCCAGCACAATAATGAGCGTTCTTCCAGCAGTACTATATAT TCTGACGGTGGCAGCGCGAGCTACGTGGCTAGTTTCGGCAACGGCGGTGCTTACGTGGACACTTGCTCCCAAGGAAATACTGGTTTTAGTCGAGTCAATG ACAACGTCGTTGACAATCGTGGCACTACGTGGACGATTGGCGCCACATCATCGTCGTCCATGGATCCATTCAGCTTCACACCTACTCATTTTCCTTCCTC GTGTTATGGATCGTCTTCCATTCCTAATTACCCTCCTTCCAAGGTTGATATAGCGTTGGAATGCGCGAGGCTGCAGCACAGATTCACTCTGCCGCCACTG GAAGTCGAAGACTACCCCAACAAACGAATGATGTCGACGATGATGATGAACGACAGCTCGAGCAGTCACCATCATAACAATCAGGGCTCGGATCTTCTGC AGGAGATCCTTTCGGTAGCCCATGCATCTCGGGAACTCATAAACAACAATACCAACGATCGGTACAACAGTTTCCAAGCAGCTGGGTTCGGTGGCGGTGT TAACGACTTCTCCGCGGTGGCTGATAATAACGACTTCACTTTCACGTCATCGACCTCAGCAGCTGGGAATAATAGGGCGGCGGATATGTCTATCAGCTCA AACGACATGTCGTCTTCATGGTTAGACAATTCCAGGTCTGTGGAGATCGGGGACGACATCGTAGATGATCAGTTCATGGGGTCGGATCGGATGGTGGAGA ACTTGAGGTGGCTCGGCATGTCTAATGACGAACTGCACCAGAACTTTATGAATGAGCACAGAATCGTTCCAATAGCCAGCATCTCAAGCTTCACGTCTAT GAACAGCCACAGTGATCAAGTTGAAGCTGGAGATAACCAACTAGATCATAACGACGGCCTAGGGTTCATCAACGACAGCGACGACGTTTACAACTCCCTT GAATTCATCGTCGAAGACGAGCCCTCCGCCAACGCCCAGGCCGACGTCGTGGCAAGCTCCCCGAGCTTCGAGGTGGTTCATGAGGAAGTCAGAGTCAACC AGGGGCTTTTCATTTCCACGCGCCAGGCTGCCGACACTTTCTTCCACCAGTTAGTGCCATCCCAGACCGTTAAGATCCAGCTCAACCCATCTGCCTCCGC CGTCCATCTCCGTCAATTCTTCACCGTCCAGAAGAAACAACAACGTCCGAACACTGTGATCAATAGTTATGGTACTGGAGTGATCAACCTTGTGAGTTTG ATCATCGTAGCTATCTTAATGCATTGCTTGAGTCTCAAGGAAGAGAACGTGGCGGGAAAGTTTGATGGGAGTAGTAGTTGTCTGAAATCGCCGGTCATTA GCATCCACGGCGGCGGTGGTGATCGGAAGGGGTCGAAGTGGGTCGGAGTGGTGCTGAAGAAGTTTGGGATATTGTTAACGATATCTTTTGCGCTGTGCAC AATGTTGGTGAACCGTGTAGTACTTGCTACTTGA
AA sequence Show only first row Show all	>Lus10007377 pacid=23166218 polypeptide=Lus10007377 locus=Lus10007377.g ID=Lus10007377.BGIv1.0 annot-version=v1.0 MAPVSLPPGFRFHPTDEELVAYYLKSKINGQKIELEIIPEVDLYKCEPWDLPGKSLLPSKDMEWYFFSPRDRKYPNGSRTNRATKTGYWKATGKDRKVNS QMRSVGMKKTLVYYRGRAPHGARSDWVMHEYRLDDRECDSPASGLQDAYALCRVFKKTAAPTPPKVHVEGYSSTMNNHHPSQLQVASQHNNERSSSSTIY SDGGSASYVASFGNGGAYVDTCSQGNTGFSRVNDNVVDNRGTTWTIGATSSSSMDPFSFTPTHFPSSCYGSSSIPNYPPSKVDIALECARLQHRFTLPPL EVEDYPNKRMMSTMMMNDSSSSHHHNNQGSDLLQEILSVAHASRELINNNTNDRYNSFQAAGFGGGVNDFSAVADNNDFTFTSSTSAAGNNRAADMSISS NDMSSSWLDNSRSVEIGDDIVDDQFMGSDRMVENLRWLGMSNDELHQNFMNEHRIVPIASISSFTSMNSHSDQVEAGDNQLDHNDGLGFINDSDDVYNSL EFIVEDEPSANAQADVVASSPSFEVVHEEVRVNQGLFISTRQAADTFFHQLVPSQTVKIQLNPSASAVHLRQFFTVQKKQQRPNTVINSYGTGVINLVSL IIVAILMHCLSLKEENVAGKFDGSSSCLKSPVISIHGGGGDRKGSKWVGVVLKKFGILLTISFALCTMLVNRVVLAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10007377 [exp]	0	1
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10041979 [exp]	7.9	0.8811
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10032103 [exp]	8.6	0.8807
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022306 [exp]	11.1	0.8713
AT3G05620			Plant invertase/pectin methyle...		Lus10020677 [exp]	15.7	0.8753
AT3G18670			Ankyrin repeat family protein ...		Lus10027721 [exp]	15.9	0.8631
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10014580 [exp]	16.3	0.8672
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	19.5	0.8504
AT5G17680			disease resistance protein (TI...		Lus10014829 [exp]	20.0	0.8555
AT1G27180			disease resistance protein (TI...		Lus10004727 [exp]	21.1	0.8479
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10011158 [exp]	28.4	0.8561

Compare expression of checked genes

Lus10007377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.