Plant FIBer expression Database

Lus10007378 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G43110 82 / 2e-19 unknown protein
AT5G20790 75 / 2e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020796
[exp]
306 / 5e-107 AT3G43110 84 / 5e-20 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G137700
[exp]
97 / 8e-25 AT5G20790 71 / 1e-15 unknown protein
PFAM info
Representative CDS sequence
>Lus10007378 pacid=23166235 polypeptide=Lus10007378 locus=Lus10007378.g ID=Lus10007378.BGIv1.0 annot-version=v1.0
ATGAATTCTGTAGATCACTCGGCTCTAGACCCGCTGGTGTTCGATTACATCAGCTGCGGCATCTCCGACATCGTCAACAACCTCTGGACCTGGGTCGCCC
TTCTCACCGCCGCCGTCAGCTTCTGGACCACCATCAGAGCCAACGCCGGCACAGCTGTAGATGACGACGGTCCCTCGACGTCGTATTCTCGCTCTTCGCT
CCGACGTCTCAAAATCCAGGTCCCGAAATCTGGTTTTGTCCTTCGCCGGGATATCATTTCGACTTCAACTCCACCGCTGGTGGAGTTGTTTCCGGTGGTG
GATACTCCTAAGACGCCTGCTTCGAGTCCGATTGTCTGCGACGACGACGGCGTGACGACCAAGGGGAAGTTCGTGACGTATTATCGGGAAATTGAGGGGG
ATGAGGAGGTGGAGGAAGAGAGATGTGAAGACGGCAAGGAAAACGACGTCGTCAGTGGGAATGTGTGGGAAGCGGAGTTGAGGCTGAAAATGAGAGAGGA
AATGGGATGGTATCGGTACCAGGATTTGACGGCGATTAACGGGAATGTTGTTAGGTTGTGGGACGGCGTTAGGAACGGAGACGGAGAGTGCAGCTACAGA
AACCCCATCTGTAGTAGTTTAGCAATTTGGTAG
AA sequence
>Lus10007378 pacid=23166235 polypeptide=Lus10007378 locus=Lus10007378.g ID=Lus10007378.BGIv1.0 annot-version=v1.0
MNSVDHSALDPLVFDYISCGISDIVNNLWTWVALLTAAVSFWTTIRANAGTAVDDDGPSTSYSRSSLRRLKIQVPKSGFVLRRDIISTSTPPLVELFPVV
DTPKTPASSPIVCDDDGVTTKGKFVTYYREIEGDEEVEEERCEDGKENDVVSGNVWEAELRLKMREEMGWYRYQDLTAINGNVVRLWDGVRNGDGECSYR
NPICSSLAIW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G20790 unknown protein Lus10007378
[exp]
0 1
AT3G43110 unknown protein Lus10020796
[exp]
2.0 0.9319
AT2G39780 RNS2 ribonuclease 2 (.1.2) Lus10041084
[exp]
4.6 0.7759
AT5G20150 ATSPX1 ARABIDOPSIS THALIANA SPX DOMA... Lus10019415
[exp]
4.7 0.8873
AT1G17710 AtPEPC1 Arabidopsis thaliana phosphoet... Lus10001479
[exp]
4.9 0.8387
AT5G20150 ATSPX1 ARABIDOPSIS THALIANA SPX DOMA... Lus10043272
[exp]
5.7 0.8788
AT1G17710 AtPEPC1 Arabidopsis thaliana phosphoet... Lus10008479
[exp]
6.5 0.7925
AT5G20150 ATSPX1 ARABIDOPSIS THALIANA SPX DOMA... Lus10030095
[exp]
7.2 0.8715
AT3G12750 ZIP1 zinc transporter 1 precursor (... Lus10006935
[exp]
7.3 0.7764
AT3G47420 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease ... Lus10031153
[exp]
8.9 0.8512
AT3G04790 EMB3119 EMBRYO DEFECTIVE 3119, Ribose ... Lus10015919
[exp]
9.8 0.8271

Lus10007378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.