Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65930 725 / 0 cICDH cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) AT1G54340 694 / 0 ICDH isocitrate dehydrogenase (.1) AT5G14590 652 / 0 Isocitrate/isopropylmalate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020798 [exp] 808 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10010431 [exp] 699 / 0 AT1G54340 747 / 0.0 isocitrate dehydrogenase (.1) Lus10012111 [exp] 697 / 0 AT1G54340 746 / 0.0 isocitrate dehydrogenase (.1) Lus10022252 [exp] 592 / 0 AT5G14590 714 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Lus10013090 [exp] 476 / 4e-166 AT5G14590 578 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G074900 [exp] 754 / 0 AT1G65930 781 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.017G144541 [exp] 744 / 0 AT1G65930 779 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.010G176000 [exp] 709 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.008G080500 [exp] 707 / 0 AT1G65930 734 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.001G347800 [exp] 651 / 0 AT5G14590 771 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10007380 pacid=23166199 polypeptide=Lus10007380 locus=Lus10007380.g ID=Lus10007380.BGIv1.0 annot-version=v1.0 ATGGCTTTCGAGAAGATCAAGGTCGCTAACCCCATCGTCGAGATGGACGGAGATGAAATGACCCGAGTTATATGGCAGTCAATTAAGGATAAGCTTATCC TCCCATTTGTGGAGTTGGACATCAAGTACTTTGACCTTGGCCTTCCTCATCGTGATGCTACCGATGATAAAGTTACAGTTGAAAGTGCAGAAGCTACTCT GAAGTATAATGTAGCAATCAAGTGTGCCACAATCACTCCAGATGAAGCTCGAGTCAAGGAGTTCAGCTTGAAGCAAATGTGGATTAGTCCAAATGGGACA ATCAGGAATATTTTGAATGGTACTGTGTTTAGAGAACCAATTCTGTGTAAAAATGTCCCTCGTCTTGTTCCAGGTTGGACAAAGCCTATTTGCATTGGCA GACATGCTTTTGGCGATCAATATAAGGCAAAAGACACTGTCATTAAAGGGAAGGGCAAAATCAAATTGCTATTTGTTCCAGAAGGAGATGGAGAGGCACA AGAAATTGAGGTTTACAACTTTACAGGCGCTGGTGGGGTAGCACAGGCCATGTACAACACTGATGAGTCCATCCGCTCATTTGCTGATGCTTCTATGAAC GTTGCTTTTGAGAAAAAGTGGCCACTTTATCTTAGCACAAAAAATACTATCCTCAAGAAGTACGATGGAAGATTCAAGGATATCTTCCAAGAAGTTTATG AAGCTAGCTGGAAGTCCAAGTTTGAGGAGGCTGGAATATGGTATGAGCACCGACTCATTGATGATATGGTGGCCTATGCTCTCAAGAGTGAAGGAGGATA CGTATGGGCTTGCAAGAATTATGATGGAGATGTTCAGAGTTTTGGATCTCTTGGATTGATGACATCTGTACTGGTATGTCCTGATGGAAAGACCATCGAA GCTGAGGCAGCCCACGGAACTGTCACTCGCCATTACAGAGTTCATCAGAAAGGTGGGGAAACCAGCACCAACAGTATCGCTTCAATCTTTGCTTGGACTA GAGGACTTGCACACAGGGCAAAGCTGGACGACAATGCTAGACTCCTGGAATTTACAGAGAAACTCGAAGCTGCCTGCATCGGAACTGTTGAGTCTGGAAA GATGACAAAGGATCTTGCGCTGATCAGTCATGGATCCAACTTGACTAGGGAGCATTACCTCAACACCGAGGAGTTCATCGATGCCGTTGCTGCTGAGCTG AAGGCAGCACTCTCTGCTTGA
AA sequence Show only first row Show all	>Lus10007380 pacid=23166199 polypeptide=Lus10007380 locus=Lus10007380.g ID=Lus10007380.BGIv1.0 annot-version=v1.0 MAFEKIKVANPIVEMDGDEMTRVIWQSIKDKLILPFVELDIKYFDLGLPHRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFSLKQMWISPNGT IRNILNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYKAKDTVIKGKGKIKLLFVPEGDGEAQEIEVYNFTGAGGVAQAMYNTDESIRSFADASMN VAFEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKFEEAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSFGSLGLMTSVLVCPDGKTIE AEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNARLLEFTEKLEAACIGTVESGKMTKDLALISHGSNLTREHYLNTEEFIDAVAAEL KAALSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10007380 [exp]	0	1
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	1.7	0.9417
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10026004 [exp]	2.4	0.9418
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	4.1	0.9437
					Lus10018472 [exp]	4.2	0.9094
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10034776 [exp]	5.3	0.9028
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10017103 [exp]	6.7	0.9275
AT4G33740			unknown protein		Lus10020507 [exp]	6.9	0.9320
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Lus10013363 [exp]	7.1	0.8940
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	7.9	0.9286
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10020210 [exp]	8.1	0.9221

Compare expression of checked genes

Lus10007380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.