Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65900 455 / 3e-159 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020799 [exp] 717 / 0 AT1G65900 426 / 3e-148 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G139400 [exp] 518 / 0 AT1G65900 541 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007381 pacid=23166242 polypeptide=Lus10007381 locus=Lus10007381.g ID=Lus10007381.BGIv1.0 annot-version=v1.0 ATGAAATGCTATTCTTCTTCATCTGCTTTTCCCTGCCGTTACCGACAAGCCTTAATATTGCTAGCTGCGGTGGTGGTCTTGGTGGTTTGTGTTCCAACAG GAAAAGCAGGGGAAATTAGTAGCGTGTCCAAGGTTGAAGATGCGGATAACTTCCATATATACTACGGACAGACATTCAAAGTTATTAAGAACGCCATCGA TGGGAGAAGCTACCTTCTCATCCAAAACAACTCAAAGATGGCTGCTAGGACTAAGTACTGCACCCAGCGCATCAGATCTTTCCTCGTCCCTTTCTCCAAC TTCTCCGCTGATAGTTACTTTTTCCCTGGTTCGTTCCTCTCTTCCCCTACCCCCCATACTCTTTATCTTCACCTCCGTGGATTTTCCTATTTCGAGTTGC TAGGATTACTAGGAAACCTGAAGGGAATGACAACAAACGCAGTGGCTTCTGTATGCACACTGAAACTATACGAAAAAGGCCAAATCGCCGTAGTTAACTA CAAGGATCGACCCCAGGATTCGACGCAATTCGCAGCAAATTTCGTTACCAACACAGATGCTCAACCACAACAAACCTGTAACTATGCCGATTTCCTGCCC TTCAACGAGGACCATCCCTTGCAGCGAGCAGAGTGGATCAAGTTCATTGCTGTTTTTGCAAACCTCGAGGCAAGGGCCAACCAAGTCTACGACAGTATTA AGGAAAATTATATGTGCTTAGCTGGAGCTGCAGCCAAGCAAACCAGACCGTTTAAGCCGGTTGTTGCCTGGTTGGGTTTTTACAACAACATTTGGTCGTT TACTCAGGACAAGTCCAAATTGAAGTATGTGGAAGATGCAGGTGGGGAGAACATGGACATCTCAATAAACAAAGTAACATACAACATCTCCAACCCTGAT GATCTGGAGGCACTCCATGCTATTCTCTGTACGGTGGACGTGGTAATCGACGAAACAGCAACTTCGGATCCGGCAGCGTATACAGTGTCAAGCTTCCTAC AGAACGTCGGCGTCGAAGATCACTCTTGCTTCGCCTTCCTAACCAACCAGACCTTGTGGCGATACGACAAGAGACAGTACAATTCCACCCTTGACTGGTA CGATGGAGCAGTGTCGCAGCCTCAGCTGGTTTTAGCAGATCTTATTGAAGCATTTTTCCCTACTGCTGCAAACTCCTCCACCACTTTCTTAAGGAACATT GCTAAGGGTGAAGGTGTTGTAAGCTTAGATGGTAGCATGTGTGACACGGAGGATTTCTCCACTCCGACCGAGCCGACCGTCGTTCCTTGTCCGAAACCGT AG
AA sequence Show only first row Show all	>Lus10007381 pacid=23166242 polypeptide=Lus10007381 locus=Lus10007381.g ID=Lus10007381.BGIv1.0 annot-version=v1.0 MKCYSSSSAFPCRYRQALILLAAVVVLVVCVPTGKAGEISSVSKVEDADNFHIYYGQTFKVIKNAIDGRSYLLIQNNSKMAARTKYCTQRIRSFLVPFSN FSADSYFFPGSFLSSPTPHTLYLHLRGFSYFELLGLLGNLKGMTTNAVASVCTLKLYEKGQIAVVNYKDRPQDSTQFAANFVTNTDAQPQQTCNYADFLP FNEDHPLQRAEWIKFIAVFANLEARANQVYDSIKENYMCLAGAAAKQTRPFKPVVAWLGFYNNIWSFTQDKSKLKYVEDAGGENMDISINKVTYNISNPD DLEALHAILCTVDVVIDETATSDPAAYTVSSFLQNVGVEDHSCFAFLTNQTLWRYDKRQYNSTLDWYDGAVSQPQLVLADLIEAFFPTAANSSTTFLRNI AKGEGVVSLDGSMCDTEDFSTPTEPTVVPCPKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65900			unknown protein		Lus10007381 [exp]	0	1
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	1.0	0.9726
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028242 [exp]	2.4	0.9665
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10038233 [exp]	3.2	0.9676
AT1G21480			Exostosin family protein (.1.2...		Lus10028632 [exp]	4.9	0.9406
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029644 [exp]	6.2	0.9429
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10032262 [exp]	7.5	0.9489
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10033796 [exp]	7.5	0.9452
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10032575 [exp]	10.6	0.9552
AT3G04600			Nucleotidylyl transferase supe...		Lus10026754 [exp]	11.3	0.9445
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10018156 [exp]	12.0	0.9488

Compare expression of checked genes

Lus10007381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.