Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37478 140 / 2e-42 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G01015 98 / 5e-24 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G15510 94 / 1e-22 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT1G03780 62 / 2e-11 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3) AT2G35880 44 / 2e-05 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020800 [exp] 339 / 9e-121 AT5G37478 148 / 1e-45 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10010706 [exp] 99 / 4e-24 AT5G15510 476 / 2e-165 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10030836 [exp] 91 / 2e-21 AT3G01015 413 / 8e-141 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10030650 [exp] 90 / 4e-21 AT5G15510 404 / 4e-137 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10018608 [exp] 56 / 5e-09 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10039844 [exp] 54 / 2e-08 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10017715 [exp] 53 / 4e-08 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10016193 [exp] 42 / 0.0002 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10029355 [exp] 40 / 0.0007 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144061 [exp] 178 / 3e-57 AT5G37478 154 / 5e-48 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.017G092100 [exp] 96 / 3e-23 AT5G15510 403 / 5e-136 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.004G118700 [exp] 81 / 6e-18 AT5G15510 410 / 8e-139 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.017G013100 [exp] 57 / 1e-09 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.007G138600 [exp] 51 / 2e-07 AT1G03780 672 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.016G066600 [exp] 41 / 0.0002 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G200400 [exp] 40 / 0.0006 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10007382 pacid=23166202 polypeptide=Lus10007382 locus=Lus10007382.g ID=Lus10007382.BGIv1.0 annot-version=v1.0 ATGGGAAGCATGGACAAAGTTCACACCAAGTCCACCCTCAAGGTGAAGACTAGCACCCAATCCTCAGTTACAATGAGCTCTCCAACAAGAGGAATGAGGA AAGAAGAAGGGAAGGAGCGGGCCGTGGAGAAAACAAAGACAAGCCCAAGAATGAGCCCAGGAGCTTCTTCCAACAAAGAGAACAACACAAACACGAAGAA GCCCAACCAGGAGTTCAAACTCCATTCTGAAGAACGAGCCATGAGACGTGCCATGTTCAACTATTACGTAGCAACCAAAATCTACGTTATAGAATACGAA AAAAGACAACTAAAAAGGCTCCAAAAGTTGATTGATGAAGAAGAAGTGAAGTCGCTAAGGAAGAAAATGGTTCCCAGAGCTCAATTGATGCCTTACTTCG ACAAACCTTTCTCCCCACAAAGATCAAACAGGCCACTGACTACGCCAAGAGAGCCAAGAATCAAGGTGGTGAACAGCAACAAGTACATGAGTTGCATCTC TGAGAATGAGATGTACAGTTTTCAGAACCCAGCTAGTCAGCAGCATCAGACATGGAACCCTGCTCATTGA
AA sequence Show only first row Show all	>Lus10007382 pacid=23166202 polypeptide=Lus10007382 locus=Lus10007382.g ID=Lus10007382.BGIv1.0 annot-version=v1.0 MGSMDKVHTKSTLKVKTSTQSSVTMSSPTRGMRKEEGKERAVEKTKTSPRMSPGASSNKENNTNTKKPNQEFKLHSEERAMRRAMFNYYVATKIYVIEYE KRQLKRLQKLIDEEEVKSLRKKMVPRAQLMPYFDKPFSPQRSNRPLTTPREPRIKVVNSNKYMSCISENEMYSFQNPASQQHQTWNPAH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37478			TPX2 (targeting protein for Xk...		Lus10007382 [exp]	0	1
AT3G61750			Cytochrome b561/ferric reducta...		Lus10012625 [exp]	1.0	0.9939
AT1G79620			Leucine-rich repeat protein ki...		Lus10023848 [exp]	1.4	0.9881
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10039610 [exp]	1.7	0.9856
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034670 [exp]	2.8	0.9818
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017863 [exp]	6.7	0.9803
AT1G79620			Leucine-rich repeat protein ki...		Lus10021003 [exp]	6.9	0.9778
AT2G28315			Nucleotide/sugar transporter f...		Lus10037397 [exp]	7.7	0.9776
AT3G23200			Uncharacterised protein family...		Lus10022188 [exp]	7.7	0.9726
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10019917 [exp]	7.7	0.9796
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10019325 [exp]	7.9	0.9777

Compare expression of checked genes

Lus10007382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.