Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03210 420 / 3e-147 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020802 [exp] 656 / 0 AT3G03210 436 / 1e-153 unknown protein Lus10031359 [exp] 496 / 2e-177 AT3G03210 410 / 2e-143 unknown protein Lus10010965 [exp] 482 / 5e-172 AT3G03210 404 / 4e-141 unknown protein Lus10002776 [exp] 53 / 6e-08 AT3G54860 102 / 3e-25 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G080600 [exp] 504 / 2e-180 AT3G03210 438 / 4e-154 unknown protein Potri.017G139800 [exp] 477 / 1e-169 AT3G03210 432 / 1e-151 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007384 pacid=23166207 polypeptide=Lus10007384 locus=Lus10007384.g ID=Lus10007384.BGIv1.0 annot-version=v1.0 ATGCTTGGCGGGTTACAGCTGGGAATGCTGCTTGCTTGCATTGTGCTGTTTGTGCCTATGGTAATGGCGGGATGGCATTTGAGCCGTCACAAGATGCTCT TCTTCAGCGGCGCCGTTTTCATCATCTCTCTCGCGGTATGCCTCCACTTGACTCCTTATTTCCCTTCCGTCAACGATTTTGTTACCTCGGTCCAATCAGT CGTTATATTCGATAATCGTGAAGACTCTTGCATTAACTTGGTGAATGAAGTTGCCTGGAATGTCAAGCAACGCGGCGGTCATGTAGGTGGAGGCGAGGCA TCGCCGGTTGTTTATGATAAGAATTGGGATTGGTCCAAGACTTGGAAAGTTATGGCGTGTGAGTTTCAGAAATTAGGCAAGGGTGATATTTCTGACTTGC TCAACGGGACGTGGATTGTGGTGGCAGGAGATTCACAGTCACGGTTAGTGGTTCAGACATTGTTGGGTTTGGTGTTGGAATCTGAACGAATGGAATCGAT CAAAGGGGAGCTGTTTAAGAGGCATAGTGATTATGGAATTGTTGTTGAAGAAATGGGAATGAAATTGGATTTTGTGTGGGCACCTTATGCTGATAACTTG ACCAATATGATGACTGGGTTTAAGCAGAACGGAAGTTACCCTGATGTCTTGGTAATGGGAGCTGGGCTGTGGCATATGCTTCATGTCACGAACGCATCGG ATTATGGTGTTTCTTTGAAGTCACTGATGGGTACAGTCTCAGTTAGGTCGCCCCATTTGTTTTGGCTTGGCATGCCGATGTTGGTAAATGGGATGCTAAA CACGGAAGAGAAGAGGGAGAGGATGAGCGATGAAATGTGGCATGCTTATGATAAAGTGCTTCGTGACAGTAGGATCCTGCGTGGATATGGTGGACCGTTT GTGTTGCTTGATATTCAATCCTTGAGTTGGAATTGTGGTCCTCGTTGTACAGTTGACGGACTGCATTATGATGGAGCTGTTTATGAAGCAGTTGTACAGA TTATGTTGAATGCATTGCTTATAGAATGTCATCCCAAGTTTGGAGCTGAATAG
AA sequence Show only first row Show all	>Lus10007384 pacid=23166207 polypeptide=Lus10007384 locus=Lus10007384.g ID=Lus10007384.BGIv1.0 annot-version=v1.0 MLGGLQLGMLLACIVLFVPMVMAGWHLSRHKMLFFSGAVFIISLAVCLHLTPYFPSVNDFVTSVQSVVIFDNREDSCINLVNEVAWNVKQRGGHVGGGEA SPVVYDKNWDWSKTWKVMACEFQKLGKGDISDLLNGTWIVVAGDSQSRLVVQTLLGLVLESERMESIKGELFKRHSDYGIVVEEMGMKLDFVWAPYADNL TNMMTGFKQNGSYPDVLVMGAGLWHMLHVTNASDYGVSLKSLMGTVSVRSPHLFWLGMPMLVNGMLNTEEKRERMSDEMWHAYDKVLRDSRILRGYGGPF VLLDIQSLSWNCGPRCTVDGLHYDGAVYEAVVQIMLNALLIECHPKFGAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03210			unknown protein		Lus10007384 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10013869 [exp]	11.7	0.9155
					Lus10024189 [exp]	17.1	0.8982
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	19.0	0.9090
AT4G32295			unknown protein		Lus10002918 [exp]	20.9	0.9076
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	29.0	0.9067
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10004688 [exp]	30.0	0.9049
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10042506 [exp]	33.0	0.9041
AT4G21970			Protein of unknown function, D...		Lus10006781 [exp]	34.1	0.7691
AT2G21650	MYB	RSM1, ATRL2, ME...	RADIALIS-LIKE SANT/MYB 1, MATE...		Lus10040453 [exp]	34.4	0.9036
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10026295 [exp]	37.2	0.9032

Compare expression of checked genes

Lus10007384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.