Plant FIBer expression Database

Lus10007387 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52640 779 / 0 Zn-dependent exopeptidases superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020806
[exp]
1078 / 0 AT3G52640 741 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2.3)
Lus10007388
[exp]
309 / 6e-102 AT3G52640 194 / 1e-58 Zn-dependent exopeptidases superfamily protein (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G082900
[exp]
862 / 0 AT3G52640 835 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF05450 Nicastrin Nicastrin
Representative CDS sequence
>Lus10007387 pacid=23166231 polypeptide=Lus10007387 locus=Lus10007387.g ID=Lus10007387.BGIv1.0 annot-version=v1.0
ATGGAGTCTGTTCCTGATCTGCAGAATTCGATGTACATGGTCGTCGATGGCTTACCCTGCGTTCGACTGCTCAATCTTTCTGGAGAAATAGGCTGTGCTA
ATCCCGGGAGAGACAAGGTTGTAGCTCCCGTTGTGAGATATCAATCTGGTCTTGATTTGGCTCTTCCTTCGGCTGTTCTGGTCTCGCTCGATGGAATTGG
TGAACTCTTTGATAGAATATCGAAAGACTCGGCGCTTTCAAAGAACATTGGTGGTATTTTAGTTCAATCTGGAGCTGATACTCGCAGCAAACTGAAAGGA
TTCTCTCCCGATTACAAGTTCCCACAAGCTGAATTTTCCCCTTATCAGAAGACCGATTACGAGTGGAATCCTATGGGATCTGGTATAATGTGGAAAAATT
ATGATTTTCCAATCTTCTTACTGACTGAGAATAGCACACAGATCATGAAAGAGATTTCTTTGAAGAATGAGAAGAATAGCAAAGGTTATACTTCAAACAT
GGCTGAATTTGATTTGGTGATGCAGACAACAAAATACGGCACGCATGACTCAGAATCTTGTTTACAGGAGGGGACTTGCCTTCCATTGGGAGGATACAGT
GTTTGGTCATCGCTTCCTCCAATCAATATATCATCCTCCAACAAAGCGAAGCCAGCTATATTAACAGTAACATCTATGGATGCTGCTTCGTTCTTCCATG
ACAAAAGCTTAGGTGCAGAATCCCCGATCTCGGGGTTGATTGCATTGCTTGCAGCAGTTGATTCACTTTCTCAAGTGGATGGTTTAGGAGATCTTGAGAA
ACAGCTTGTTTTTGCAGTTTTTACTGGAGAAGCATGGGGGTACCTTGGTAGTAGACGATTCTTGCTTGAACTTGATTTGCACTCAGATGCTATTACTGGC
CTTGACAACCAACTGATTGAGACGGTAATTGAAATTGGATCAGTTGGGAAGGCCTTCAATCAAGGGACCAAAAGCTTCTTTGCGCACACCACTGGGGTTC
CATCTGCTGCAAACCCAACTTCGAGTGCTTTAAAACATGCTCAAATTTCTCTAGAGTCGCAGAATATTTCAGTTTCATTGGCAAGCACATCAAACCCTGG
AATACCACCATCATCCCTGATGTCATTTCTGAAAAAGAACTCATCAACCTCTGGTTTTGTGTTGGAAGACTTTGATGCTGCTTTCAGCAACAATTTTTAC
CATAGTCATCTTGATGATAACTCAAACATAAACTCATCATCGATCGTGGCAGCTGCATCTCTTGTTGCTCGGACCCTTTACATCCTCGCAAACGAGAACA
AAAATATAAAGAACTCTGTTCTAAACTCCATCAATGTTAATGCCTCCCTGGTGGAAGAGATGTTGAGTTGTCTGTTGAAGTGCGATCCCGGTCTGTCTTG
TGATCTGGTGACGAACTACATTTCCACGACCACAACATGCCCTGTTCATTATGTTGGCGTATTCCAAGGGAAGCCTTCTGCGACTCCCGATATTGGATCC
ATCAACGATGTTTCCCGTTTCGTTTGGAACTTCCTGGCTGACAAAACATCAATGCTCAAGGAAAGCAGTAAATCTAACTGCTCGCAAGACTGCAGCAAGA
AAGATGAAGTGTGCGTGAAAGCAGAAACAGAAGGTGTTTGCGTTACTTCCACAACCAGGTACGTACCAGCATATTCAACCAGGTTGAAATACGATTCTGG
GATATGGACTGTCATGCCTCCAAATTCATCGGATCCCATGGCTAAGGCGGACCCGGTTTGGACGGAGAGCTACTGGGACGTAACCGGTCTGAGGGTATAC
GAAGTACAGGATGCTAATTTCGACAGGCTCATTTTGCTAGCGGGAATCGCTGTAACTGTGTTGGCTTACATTGCCATTGTAATTACAAGAGCGTTCATCA
CAAAGGCCTTGAAGCGAGATTGA
AA sequence
>Lus10007387 pacid=23166231 polypeptide=Lus10007387 locus=Lus10007387.g ID=Lus10007387.BGIv1.0 annot-version=v1.0
MESVPDLQNSMYMVVDGLPCVRLLNLSGEIGCANPGRDKVVAPVVRYQSGLDLALPSAVLVSLDGIGELFDRISKDSALSKNIGGILVQSGADTRSKLKG
FSPDYKFPQAEFSPYQKTDYEWNPMGSGIMWKNYDFPIFLLTENSTQIMKEISLKNEKNSKGYTSNMAEFDLVMQTTKYGTHDSESCLQEGTCLPLGGYS
VWSSLPPINISSSNKAKPAILTVTSMDAASFFHDKSLGAESPISGLIALLAAVDSLSQVDGLGDLEKQLVFAVFTGEAWGYLGSRRFLLELDLHSDAITG
LDNQLIETVIEIGSVGKAFNQGTKSFFAHTTGVPSAANPTSSALKHAQISLESQNISVSLASTSNPGIPPSSLMSFLKKNSSTSGFVLEDFDAAFSNNFY
HSHLDDNSNINSSSIVAAASLVARTLYILANENKNIKNSVLNSINVNASLVEEMLSCLLKCDPGLSCDLVTNYISTTTTCPVHYVGVFQGKPSATPDIGS
INDVSRFVWNFLADKTSMLKESSKSNCSQDCSKKDEVCVKAETEGVCVTSTTRYVPAYSTRLKYDSGIWTVMPPNSSDPMAKADPVWTESYWDVTGLRVY
EVQDANFDRLILLAGIAVTVLAYIAIVITRAFITKALKRD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G52640 Zn-dependent exopeptidases sup... Lus10007387
[exp]
0 1
AT1G09060 Zinc finger, RING-type;Transcr... Lus10017092
[exp]
1.4 0.9443
AT4G10050 esterase/lipase/thioesterase f... Lus10041054
[exp]
1.4 0.9330
AT5G19840 2-oxoglutarate (2OG) and Fe(II... Lus10000493
[exp]
3.0 0.9194
AT1G09060 Zinc finger, RING-type;Transcr... Lus10037812
[exp]
4.5 0.9151
AT5G54890 RNA-binding CRS1 / YhbY (CRM) ... Lus10040080
[exp]
4.9 0.9145
AT5G14590 Isocitrate/isopropylmalate deh... Lus10013090
[exp]
5.0 0.9146
AT3G47630 unknown protein Lus10023597
[exp]
7.5 0.9062
AT5G14250 CSN3, FUS11, CO... FUSCA 11, COP9 SIGNALOSOME SUB... Lus10041586
[exp]
8.5 0.9094
AT3G51270 protein serine/threonine kinas... Lus10013682
[exp]
8.8 0.9138
AT1G05410 Protein of unknown function (D... Lus10010550
[exp]
10.1 0.9042

Lus10007387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.