Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52640 194 / 2e-58 Zn-dependent exopeptidases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020806 [exp] 332 / 5e-111 AT3G52640 741 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2.3) Lus10007387 [exp] 309 / 3e-102 AT3G52640 830 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G082900 [exp] 223 / 4e-69 AT3G52640 835 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007388 pacid=23166220 polypeptide=Lus10007388 locus=Lus10007388.g ID=Lus10007388.BGIv1.0 annot-version=v1.0 ATGGCTGATGCTGCTCAGCTGAGCTTACCGGAGAACCCCAATTTCTCAGCTCCTTTCATCAATCGCATTTTTTCTTTCCGACGCTTATGCTCTGCTCTTT CTGCTCCGATGAACTTCTACTTCTCATTAGTAGTGTTTCTATTTCTCTCGAGATGCATCCGCGGAATCTCCGGACAAGCAAAATCAATGGAGTCCGTTCC TGATCTGCATAATTCGATGTACAAGGTCGTCGATGGCTTACCCTGCGTTCGACTGCTCAATCTTTCTGGGGAAATAGGCTGTGCTAATCCCGGGAGAGAC AAGGTTGTAGCTCCCGTTGTGAGATATCAATCTGGTCTTGATTTGGCTCTTCCTTCGGCTGTTCTGGTGTCGCTCGATGGAATTGGTGAACTCTTTGATA GAATATCGAAAGACTCGGCGCTTTCAAAGAACATTGGTGGTATTTTAGTTGAATCTGGAACTGATACTCGCAGCAAACTGAGAGGATTCTCTCCTGATTA CAAGTTCCCACAAGCTGAATTTTCCCCTTATCAGAAGACCGATTACAAGTGGAATCCTATGGGATCTGGTATAATGTGGAAAAATTATGATTTTCCAATC TTCTTACTGACTGAGAATAGCACACAGATCATGAAAGAGGTAACACCAATAGTTCTCTAG
AA sequence Show only first row Show all	>Lus10007388 pacid=23166220 polypeptide=Lus10007388 locus=Lus10007388.g ID=Lus10007388.BGIv1.0 annot-version=v1.0 MADAAQLSLPENPNFSAPFINRIFSFRRLCSALSAPMNFYFSLVVFLFLSRCIRGISGQAKSMESVPDLHNSMYKVVDGLPCVRLLNLSGEIGCANPGRD KVVAPVVRYQSGLDLALPSAVLVSLDGIGELFDRISKDSALSKNIGGILVESGTDTRSKLRGFSPDYKFPQAEFSPYQKTDYKWNPMGSGIMWKNYDFPI FLLTENSTQIMKEVTPIVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007388 [exp]	0	1
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10042159 [exp]	1.4	0.9198
AT5G58100			unknown protein		Lus10027581 [exp]	2.0	0.9046
AT3G57570			ARM repeat superfamily protein...		Lus10042364 [exp]	3.2	0.9011
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	6.0	0.9030
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	6.3	0.9020
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	7.7	0.8969
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	11.8	0.8953
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014896 [exp]	12.3	0.8909
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	12.8	0.8866
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	13.1	0.8899

Compare expression of checked genes

Lus10007388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.