Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19660 412 / 5e-144 Wound-responsive family protein (.1.2) AT1G75380 406 / 1e-141 ATBBD1 bifunctional nuclease in basal defense response 1 (.1.2.3) AT5G66050 102 / 5e-25 Wound-responsive family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024277 [exp] 608 / 0 AT1G75380 452 / 4e-161 bifunctional nuclease in basal defense response 1 (.1.2.3) Lus10041852 [exp] 103 / 9e-25 AT5G66050 261 / 2e-85 Wound-responsive family protein (.1.2) Lus10028398 [exp] 102 / 2e-24 AT5G66050 261 / 1e-85 Wound-responsive family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G032500 [exp] 483 / 4e-172 AT1G75380 495 / 4e-178 bifunctional nuclease in basal defense response 1 (.1.2.3) Potri.005G230600 [exp] 469 / 1e-166 AT1G75380 463 / 3e-165 bifunctional nuclease in basal defense response 1 (.1.2.3) Potri.005G105900 [exp] 109 / 7e-27 AT5G66050 283 / 7e-94 Wound-responsive family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02577 [flax] [poplar] DUF151 Domain of unknown function (DUF151)
Representative CDS sequence Show only first row Show all	>Lus10007390 pacid=23157953 polypeptide=Lus10007390 locus=Lus10007390.g ID=Lus10007390.BGIv1.0 annot-version=v1.0 ATGGCGTCACTGCAAGGACCGGTTACCTGCCCTGCTGTTCGAGCAAAGCATGGAGGATTCGATATGTGCGCTTTTCCAATGATGAATGGCTGTGTAATGA GAGCCAAGGTGGTGAGGAATGAGTTACTGGGGTTCAGGGGAACCCTTGGTTACAAGACTAAGGCGGGTTTAGTCTCACGGAGGCGGAATTTCTCCAAGGT GCATTGTGCTTTGAGTTCTTCATCAAATGATAATGGAAATATGGCTGAGAACTTTAACGACAAGGATGATGATTATGTCAACTCTTCTGTAGTTGAAGCT GGTATGGGATATGTGTTCCTCTGCCCAGTGAATAGTCATTCTGCTCAGATCTGTGATCTTGATTTGTCTCTTAATATGCTTTTTGCAGTGGAGGTGAAGA GTGGTTCAGAAGGTTTCATGATCAAGATGAGGGATGGAAGACACTTGAGATGCGTCCATAATAATCCTCAAGGAAGCCACCTGCCTGACTATGCTCCTCA TCCTGCAATTGTGTTGAAGATGGAAGATGGGACGGGTCTTCTCCTCCCAATAATTGTTTTGGAGATGCCAAGCGCATTGCTCATGGCAGCAGTCCGAAAT GTTCAAATTGCTAGACCCACAATGTATCAAGTGGTGAAGGAAATGATTGACAAGATGGGCTACGAAGTTAAGCTAGTCAGAGTTACTAGGCGAGTGCATG AAGCATATTTCGCCCAATTGTATCTCACAAAGGCGGGTTCTGAGGAGCACATTAGTTTTGACCTCCGCCCTTCCGATGCTATCAACATTGCAGTGAGATG CAAGGTACCAATTCAAGTGAACAAGTACCTGGCATACAGTGATGGGATGAGAGTCATTGAATCTGGAAAGCTCGCGCAGTCTCTTGCTGCTGATGGATTA CTATTCACCGAACTAGACCGGCCCACGGGTCAGCCATGTCTGGATACCAAAGAGTTTGATCTTGTGCGCAACATGTTCCAAGCTGCCATCGAGGAGCGTT ACAATGATGCTGTCCTTACTTACATTGTCCAGAAGGGGAATTTCAAAACAACTCGATCAACTGAGAGCAGGGGAGCTGGACGGAGAGTCGACGGAATAGA TCAAGCGGAGGTGGAGACAGAGCAAGGACATCAGAGGCGAAGAATGGACGGTGATGCAGAGCAAGGACGGTAG
AA sequence Show only first row Show all	>Lus10007390 pacid=23157953 polypeptide=Lus10007390 locus=Lus10007390.g ID=Lus10007390.BGIv1.0 annot-version=v1.0 MASLQGPVTCPAVRAKHGGFDMCAFPMMNGCVMRAKVVRNELLGFRGTLGYKTKAGLVSRRRNFSKVHCALSSSSNDNGNMAENFNDKDDDYVNSSVVEA GMGYVFLCPVNSHSAQICDLDLSLNMLFAVEVKSGSEGFMIKMRDGRHLRCVHNNPQGSHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSALLMAAVRN VQIARPTMYQVVKEMIDKMGYEVKLVRVTRRVHEAYFAQLYLTKAGSEEHISFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLAQSLAADGL LFTELDRPTGQPCLDTKEFDLVRNMFQAAIEERYNDAVLTYIVQKGNFKTTRSTESRGAGRRVDGIDQAEVETEQGHQRRRMDGDAEQGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19660			Wound-responsive family protei...		Lus10007390 [exp]	0	1
AT3G47300		SELT	SELT-like protein precursor (....		Lus10018247 [exp]	1.0	0.8547
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10014128 [exp]	2.0	0.8080
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	8.1	0.8051
AT1G02475			Polyketide cyclase/dehydrase a...		Lus10009002 [exp]	10.4	0.6930
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	11.0	0.7804
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	11.3	0.8023
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10026047 [exp]	12.4	0.7668
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10012826 [exp]	13.5	0.7814
AT5G04550			Protein of unknown function (D...		Lus10008987 [exp]	14.0	0.7915
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10012832 [exp]	15.0	0.7724

Compare expression of checked genes

Lus10007390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.