Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75310 209 / 1e-54 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT4G36520 206 / 1e-53 Chaperone DnaJ-domain superfamily protein (.1) AT4G12770 175 / 2e-44 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12780 173 / 8e-44 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G21660 160 / 3e-41 Chaperone DnaJ-domain superfamily protein (.1) AT1G75100 125 / 4e-29 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G30280 94 / 1e-19 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024270 [exp] 1484 / 0 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1) Lus10010642 [exp] 619 / 0 AT1G75310 261 / 8e-71 auxilin-like 1, auxin-like 1 protein (.1) Lus10033205 [exp] 617 / 0 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1) Lus10041769 [exp] 203 / 1e-52 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10012303 [exp] 173 / 7e-44 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016079 [exp] 172 / 2e-43 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012302 [exp] 170 / 3e-42 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016078 [exp] 157 / 3e-38 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10018854 [exp] 131 / 4e-31 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G229300 [exp] 242 / 6e-65 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G033800 [exp] 237 / 3e-63 AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G120700 [exp] 222 / 2e-58 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G022600 [exp] 218 / 2e-57 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G217200 [exp] 188 / 1e-48 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.014G197600 [exp] 185 / 1e-47 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G079200 [exp] 151 / 3e-38 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 145 / 4e-36 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G081500 [exp] 127 / 1e-30 AT1G30280 228 / 2e-69 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 113 / 3e-25 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007394 pacid=23157956 polypeptide=Lus10007394 locus=Lus10007394.g ID=Lus10007394.BGIv1.0 annot-version=v1.0 ATGGAGTTCGGGTCTAGAGTGGTGGATTACAGGGAGATATTCGCTCGCTCGGGGACGTCGTCTATCCCGATGCTTGATGTTCCCGAGCTGAACGAAAGGA ACGGTTGCGTTGATTCGCGGAGCTCCAGACCGGATTACACGAAGATATTTGGTGGATTCGGAGAAGCGGACTTTGCTATGCCGTACGATGAGTTGATTTC AAGAGCGGAGAAGGAAATGAATTCTTCTCGAGAAGCTCGGGCTTCAGCTAATTCAAGCTCAGAGCTTGATCAACCAAGTTTTGCTGAAAGGAGGAGATTG TCAGCAGAAGCCTCTGTTCAATCATTGAATGGTCGGAAACATGTCAACATTTCCTATCATAAAACAAACTCAGGAGGCAGAATGGGGAGAAGTGGCATGA CACACATTGCTCAGCTTCATGCTGTCCCTGGCTATAGTCGTTTAATTGATGAAAATGTCAGCGAGGAGATGAGGGAAGACAGGTCCCATAACAAAGCTTA TTCGGGTCCACTCCTCTTCAGCAATGGTTCAGGACGACAGCATGGGGAACATCACAGAACGTTCAGTTCCATGTCAAATGACATGTTTGATGTTCATCGA GGTGCACATCCACCTGGAATCTCATCGTCTCCAATCTCCCCCCTCTCTTTGGGTAATGAGAAGGGCACTACTTCCAACAAATCCATGAAATCTAAACTTG GTATTCAGAAAAGTGCCGGACGAAGTTCTTCGCCACCGATTTTGGATGATGAAGTGAATGCAAATTCAACTGCTGCTGCCTCTGCTGCTGCAGTGAGAAA GGCAATAGACGAAGCTCAAGCAAAAATCAAATTCGCAAAAGCGCTAATGGAAAGGAAAAAGGATGGGCGTTCAAGACGGAAGGTCAACTATGAGGTGACA TATGAGAAAATGGAGGCTAAGTCTGCAGAAAAGACATGTAAATACAAAGAGGAGGCTGAGGTATCATACGTTAGAGATGGTATGCCAAAGAAGCAAGATT CTAGTGGCTCGTTGGTAGAAGATTCTGCAGAAGCCTGCCCAGTGATTTCCGATGAGACTGACGTTTTTATTCCTAGGCCTGCTAATGCAGTAACAAACAA TAAAGAAGCTACATTTACTGAACTTGATTGTGGACGGGCGGAAACAAAAATGAGCAAATCATTACAGGAGTTCCCTGAAGCTATTAGTATCAGTGGGGAC AAGCCATCAACGTCAGAGTTTGAGCAAGAAGTCAAGGTAAAGAAAGTGACGCCAAGTATTTTTGAAAACAAATGGAAGGAGAAGATGAAAGCATCCATTT TACAGGACAAATTTGAAAATATAATGAGAATGCTGAGGGGACCAGCAGAAATTCCAGATGTTGAAGTACAGTTGCTGCCGGGGGGAAATCTTGATGATTT AGACAAAGGCCTAGGGGAGATAGGAAGTGAGGAGAAACAAGGGGCAGATCACACTGAAGAGGGAGTCAAAGGTGGATCAAATAAAGGTATATTAAGAGAA GAGGATGAGAGCACAGTTAAAGTTAATTCCTGGCTGAATGACATTGAGAAGGTACAGAAGGAACATATAGATGATCAGAATGTGGGACAAATTGAGAAGA ACCAAAGTGTTGGTGTGAGGGAAGATGAAACCCTTAGTACTTCAGGTGAAATTGGTGCAGGGGAAACATTACAAGTTAAGTTTGGTCATGTTGATCCAGA GAATGTAGGTGAAGATAGGGAGGAAGTAAAAGAAACGCTTGGGCAGGAACAAGAGAAAAAAATTGAGATCGATGAGGATGATGGCATTGGAACTAGAGCT GGGCAAGAAAACTTTCCAGAACATGCGGACACTGAGAGATCAGGATCAGATGTTCATCAGATGTCAGAAGATGAAAAAAGCGACAAGGTCATGCAAGAGA TTCCTAGACCACTGAATGGTAATATTGAAGTGGTTCCATTGTCGCCCAAGCCAGATGATGGTGACAGTGTAGACAAGATTTATGAAGCTCATAGTTACGT TGACAATGCAACCAACACATTCTCTGGCCTTAAACAGATTGGAAACGAATCGGAAAAAGTTGAAGAGGCAGATAACTCGGAGGAAGAGGAGGATTCTGCA AGGTTTGGCCGGACAACTAGTTTCAGTTGGTGTGATGAGATTGGGGAACAAAGGGATGGGCAAGATGAGCGACCACAGCTCCTCATTGTTGATGAAAACG GGGTATGTTCTAGTGGAGTTGCCTTCAACTTTGATCGACAGCAAACTGAAGATAGTGCAACAATATCTGAAGAAACTTGCTGTCCGGAAAAGTATGTTGT AGACGAGGCAAAAGCGCAGTCAGAAGAAGTCAAAGAGAATGTCGATGATGCCGAAGTTGGCAGCACAGGTGAATCAACTAATCATAGTTTTACCTCTCTA TGCGAGGAGAAGGTTTCACCAGATGTGAAATGCAGGGAAAATCATGTAGAGGGAGCTACTTGTACATTAGAAGAACCTAATAAGGAAACTGTGTTTAACA GTACATTATTGGATGACGAGAGATTATGCGAGGATGCAATGGGTACGAGCACAAGTCAGCAATCTACAGTGCCCGAGAAGGAAGAAGCTGCAGGGGTGTC TTCATATGAGAAAACAGGTGAAAATGTCATTGACAATGCTGAGGGAACTCATGACGAGACCCAGCAAACTCATGACGAGACCCAGCAGACACAAGAGAGA GTAGATAAACATAGCCCGCAAAAGGACGTGGATATGGAAAGGCAGCAGAGATCGATTAAAAAGGAACTGGTTAATGAGAAAGACTTAGAAATGGAAAAAC AGAGAATAGCTGTGGAAAGAGCAATACGGGAAGCTCGTGAGAGAGCATTTGCTGAAGCTCGAGAGAAAGCAGAAAAGGCAGCTGCAGAGAGAGATGCAGC AGAAGCTCAGCGAAGGGCAAAGGCTGCTATGGCTGCTCGAGAAAGGACTGCAAGGGCTAATGCAGCTGAGAAAGCTGCTACCAAAGCGAGACTCAAAGCT GAACGAGCTGCAGTCGAAAGAGCAACTGCAGAGGCTAGGGAACGAGCTTTGGAGAAAGCATTATCTGAGAAAGCTTCGTACAAACCTGCCACTTTCAAGG ATGATAGAAGGTCCTCCACTACTTTCTTCCAGGATCAGCGATACAAAAGCTCAGCTTCTTCCCCCAGTCCAAGATATTCGAGTTCTTCTAACAATGCCAT TCCTATGTCAACTGATATATCTGGTGGAGGAAACGTTGAATCATCTCAGAGGTCTAAAGCCTCTTTGGAGAAGCAGCAGCAAATGGCTGAGCGTGCAGCG AAAGCTCTGGCAGAGAAGAACATGCGCGATCTTCTTGTGCAGAAAGAGCAGGCTGAGAAAAATAGGCTAGCGTCGATTCTGGATGCCGAAATCAGAAGGT GGTCAAGTGGGAAAGAGTGGAACTTGCGTGTTCTACTTTCAACGCTCCACTACATCCTTGGGCCGGACAGTGGTTGGCAGGCAATTCCGAGGACAGATCT GAACTCAGCTACTGCTGTAAGGAAAGCATACAAGAAGGCAACTCTTTTTGTTCATCCCGACAAGTTGCAGCAACGAGGTGCCAGCATTCGCCACAAGTAT GTCTGCGAGAAGGTGTTCGAACTTCTCAAGGATGCGTGGAACAGATTCAGTGCAGATGACCGGTAA
AA sequence Show only first row Show all	>Lus10007394 pacid=23157956 polypeptide=Lus10007394 locus=Lus10007394.g ID=Lus10007394.BGIv1.0 annot-version=v1.0 MEFGSRVVDYREIFARSGTSSIPMLDVPELNERNGCVDSRSSRPDYTKIFGGFGEADFAMPYDELISRAEKEMNSSREARASANSSSELDQPSFAERRRL SAEASVQSLNGRKHVNISYHKTNSGGRMGRSGMTHIAQLHAVPGYSRLIDENVSEEMREDRSHNKAYSGPLLFSNGSGRQHGEHHRTFSSMSNDMFDVHR GAHPPGISSSPISPLSLGNEKGTTSNKSMKSKLGIQKSAGRSSSPPILDDEVNANSTAAASAAAVRKAIDEAQAKIKFAKALMERKKDGRSRRKVNYEVT YEKMEAKSAEKTCKYKEEAEVSYVRDGMPKKQDSSGSLVEDSAEACPVISDETDVFIPRPANAVTNNKEATFTELDCGRAETKMSKSLQEFPEAISISGD KPSTSEFEQEVKVKKVTPSIFENKWKEKMKASILQDKFENIMRMLRGPAEIPDVEVQLLPGGNLDDLDKGLGEIGSEEKQGADHTEEGVKGGSNKGILRE EDESTVKVNSWLNDIEKVQKEHIDDQNVGQIEKNQSVGVREDETLSTSGEIGAGETLQVKFGHVDPENVGEDREEVKETLGQEQEKKIEIDEDDGIGTRA GQENFPEHADTERSGSDVHQMSEDEKSDKVMQEIPRPLNGNIEVVPLSPKPDDGDSVDKIYEAHSYVDNATNTFSGLKQIGNESEKVEEADNSEEEEDSA RFGRTTSFSWCDEIGEQRDGQDERPQLLIVDENGVCSSGVAFNFDRQQTEDSATISEETCCPEKYVVDEAKAQSEEVKENVDDAEVGSTGESTNHSFTSL CEEKVSPDVKCRENHVEGATCTLEEPNKETVFNSTLLDDERLCEDAMGTSTSQQSTVPEKEEAAGVSSYEKTGENVIDNAEGTHDETQQTHDETQQTQER VDKHSPQKDVDMERQQRSIKKELVNEKDLEMEKQRIAVERAIREARERAFAEAREKAEKAAAERDAAEAQRRAKAAMAARERTARANAAEKAATKARLKA ERAAVERATAEARERALEKALSEKASYKPATFKDDRRSSTTFFQDQRYKSSASSPSPRYSSSSNNAIPMSTDISGGGNVESSQRSKASLEKQQQMAERAA KALAEKNMRDLLVQKEQAEKNRLASILDAEIRRWSSGKEWNLRVLLSTLHYILGPDSGWQAIPRTDLNSATAVRKAYKKATLFVHPDKLQQRGASIRHKY VCEKVFELLKDAWNRFSADDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10007394 [exp]	0	1
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	4.2	0.9434
AT1G17070			GC-rich sequence DNA-binding f...		Lus10006830 [exp]	5.3	0.9111
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	6.0	0.9360
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029268 [exp]	7.7	0.9282
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	8.5	0.9269
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	10.7	0.9259
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033718 [exp]	11.8	0.9171
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10036006 [exp]	14.7	0.9014
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10019840 [exp]	15.4	0.8996
AT1G27060			Regulator of chromosome conden...		Lus10037219 [exp]	17.7	0.8976

Compare expression of checked genes

Lus10007394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.