Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42790 371 / 8e-131 ARS5, ATPSM30, PAF1 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) AT1G47250 371 / 1e-130 PAF2 20S proteasome alpha subunit F2 (.1) AT3G22110 130 / 9e-37 PAC1 20S proteasome alpha subunit C1 (.1) AT3G14290 126 / 3e-35 PAE2 20S proteasome alpha subunit E2 (.1) AT1G53850 126 / 3e-35 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT1G16470 122 / 9e-34 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 120 / 4e-33 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT5G35590 117 / 1e-31 PAA1 proteasome alpha subunit A1 (.1) AT2G05840 114 / 2e-30 PAA2 20S proteasome subunit PAA2 (.1.2) AT5G66140 113 / 4e-30 PAD2 proteasome alpha subunit D2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007396 [exp] 424 / 1e-151 AT5G42790 442 / 8e-159 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10024269 [exp] 420 / 3e-150 AT5G42790 440 / 4e-158 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10042145 [exp] 132 / 4e-37 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10004235 [exp] 122 / 4e-34 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10017135 [exp] 118 / 6e-32 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10036210 [exp] 117 / 6e-32 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10037416 [exp] 117 / 2e-31 AT2G27020 478 / 1e-173 20S proteasome alpha subunit G1 (.1) Lus10027669 [exp] 113 / 4e-30 AT2G05840 473 / 1e-171 20S proteasome subunit PAA2 (.1.2) Lus10037454 [exp] 118 / 6e-30 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G033900 [exp] 402 / 3e-143 AT5G42790 449 / 1e-161 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Potri.005G229200 [exp] 397 / 7e-141 AT5G42790 455 / 9e-164 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Potri.016G015400 [exp] 134 / 4e-38 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1) Potri.006G008800 [exp] 132 / 2e-37 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1) Potri.012G123550 [exp] 124 / 2e-34 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 124 / 2e-34 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.001G162900 [exp] 122 / 7e-34 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1) Potri.006G110800 [exp] 119 / 2e-32 AT2G05840 453 / 7e-164 20S proteasome subunit PAA2 (.1.2) Potri.003G072500 [exp] 117 / 1e-31 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1) Potri.001G224100 [exp] 117 / 2e-31 AT2G27020 457 / 3e-165 20S proteasome alpha subunit G1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit CL0052 [flax] [poplar] NTN PF10584 [flax] [poplar] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Lus10007395 pacid=23157951 polypeptide=Lus10007395 locus=Lus10007395.g ID=Lus10007395.BGIv1.0 annot-version=v1.0 ATGGACCCAGCAGGCAGGCTGTTCCAGGTAGAGTACGCGATGGAGGCAGTGAAGCAAGGCTCAGCCGCAATTGGTATGCGATCCAAGACCCACATTGTCC TAACTTGCATCAATAAGGGCAACTCCGAGCTCTCTTCCCACCAGAAGAAGATCTTCAAGGTCGACGACCACATCAGAGTTTCCATTACTGGGCTCACCGC TGACGGCCGCGTGCTTTCGCGCTATATGGGATCCGAGTGTATCAATTACAGCTTCACCTACGAGTCACCCCTTCCTGTCGGCCGTCTCGTTGATCAGCTC GCTGACAAGGCGCAGGTCTGCACTCAGCGGTTTTGGAAACGACCTTATGGTGTTGGCCTATTGGTAGCTGGGTTGGATGAATCAGGGGCACATCTCTACT ACAACTTCCCAAGTGGAAAATACTTTGAATATGAGGGTTCTTCCATAGGTTCCCGTTCACAAGCTACAAAGACTTACTTGGAGCGGAGGTTTAAGAGCTT CATGGAGTCTTCCCGAGATGATCTTGTCAAGAATGCTTTAATTGCAGTTAGAGAAACCTTACAGGGAGAGACGCTCAAGAGTTCCATTTGCACAATTGCT GTGGTTGGAGTTGGTGATGCATTTCACATTCTAGATCAAGAGACGGTACATCAACGGATCGATGCATTTGAAATTATGAAGGAGCCAGAGGCACCTGCCG CTGAACCTGATGCTGATGAAGGAGCTGATGCAACACAAGATCCTCCTGCTCCTGCCCCTACCCTTGCTGAAGGGGCAGCGCCAATGGACATATGA
AA sequence Show only first row Show all	>Lus10007395 pacid=23157951 polypeptide=Lus10007395 locus=Lus10007395.g ID=Lus10007395.BGIv1.0 annot-version=v1.0 MDPAGRLFQVEYAMEAVKQGSAAIGMRSKTHIVLTCINKGNSELSSHQKKIFKVDDHIRVSITGLTADGRVLSRYMGSECINYSFTYESPLPVGRLVDQL ADKAQVCTQRFWKRPYGVGLLVAGLDESGAHLYYNFPSGKYFEYEGSSIGSRSQATKTYLERRFKSFMESSRDDLVKNALIAVRETLQGETLKSSICTIA VVGVGDAFHILDQETVHQRIDAFEIMKEPEAPAAEPDADEGADATQDPPAPAPTLAEGAAPMDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007395 [exp]	0	1
					Lus10015310 [exp]	3.9	0.8262
AT5G52975			Protein of unknown function (D...		Lus10027141 [exp]	5.7	0.7353
					Lus10021453 [exp]	6.2	0.8156
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10034246 [exp]	8.1	0.7855
AT1G61420			S-locus lectin protein kinase ...		Lus10019600 [exp]	9.6	0.7730
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038525 [exp]	11.0	0.7465
AT5G53480			ARM repeat superfamily protein...		Lus10014540 [exp]	15.1	0.6649
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	15.5	0.7496
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Lus10043483 [exp]	16.1	0.7449
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023453 [exp]	21.4	0.7393

Compare expression of checked genes

Lus10007395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.