Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42790 443 / 5e-159 ARS5, ATPSM30, PAF1 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) AT1G47250 442 / 7e-159 PAF2 20S proteasome alpha subunit F2 (.1) AT3G14290 156 / 1e-46 PAE2 20S proteasome alpha subunit E2 (.1) AT1G53850 155 / 3e-46 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT3G22110 153 / 3e-45 PAC1 20S proteasome alpha subunit C1 (.1) AT1G16470 146 / 9e-43 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 144 / 3e-42 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT5G35590 136 / 6e-39 PAA1 proteasome alpha subunit A1 (.1) AT5G66140 131 / 5e-37 PAD2 proteasome alpha subunit D2 (.1) AT2G05840 130 / 1e-36 PAA2 20S proteasome subunit PAA2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024269 [exp] 488 / 5e-177 AT5G42790 440 / 4e-158 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10007395 [exp] 421 / 2e-150 AT5G42790 370 / 1e-130 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10042145 [exp] 152 / 5e-45 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10004235 [exp] 143 / 3e-42 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10036210 [exp] 141 / 6e-41 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10017135 [exp] 141 / 9e-41 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10037454 [exp] 146 / 7e-40 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10003936 [exp] 145 / 1e-39 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10037416 [exp] 132 / 3e-37 AT2G27020 478 / 1e-173 20S proteasome alpha subunit G1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G033900 [exp] 474 / 2e-171 AT5G42790 449 / 1e-161 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Potri.005G229200 [exp] 469 / 4e-169 AT5G42790 455 / 9e-164 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Potri.016G015400 [exp] 154 / 8e-46 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1) Potri.006G008800 [exp] 153 / 2e-45 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1) Potri.001G162900 [exp] 152 / 3e-45 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1) Potri.012G123550 [exp] 147 / 2e-43 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 147 / 2e-43 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.003G072500 [exp] 147 / 3e-43 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1) Potri.001G224100 [exp] 132 / 2e-37 AT2G27020 457 / 3e-165 20S proteasome alpha subunit G1 (.1) Potri.006G110800 [exp] 132 / 2e-37 AT2G05840 453 / 7e-164 20S proteasome subunit PAA2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit CL0052 [flax] [poplar] NTN PF10584 [flax] [poplar] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Lus10007396 pacid=23157954 polypeptide=Lus10007396 locus=Lus10007396.g ID=Lus10007396.BGIv1.0 annot-version=v1.0 ATGTTCAGGAACCAGTACGATACGGACGTGACCACATGGAGCCCAGCGGGCAGGCTGTTCCAGGTAGAGTACGCGATGGAGGCAGTGAAGCAAGGCTCAG CCGCAATTGGTCTGCGATCCAAGACCCACGTTGTCCTAGCTTGCGTCAATAAGGCCAACTCCGAGCTCTCTTCCCACCAGAAGAAGATCTTCAAAGTCGA CGACCACATCGGAGTTGCCATTGCTGGGCTCACCGCTGACGGCCGCGTGCTTTCGCGCTATATGCGATCCGAGTGTATCAATTACAGCTTCACCTACGAG TCACCCCTTCCCGTCGGCCGTCTCGTTGTTCAGCTCGCTGACAAGGCGCAGGTCTGCACTCAGCGGTCTTGGAAACGGCCTTATGGTGTTGGTCTATTGG TAGCTGGGTTGGATGAATCAGGGGCACATCTCTACTACAACTGCCCAAGTGGAAACTACTTTGAATATGAGGGTTTTGCCATAGGTTCCCGTTCACAAGC TGCAAAGACTTACTTGGAGCGGAGGTTTAAGAGCTTCATGGAGTCTTCCCGAGATGATCTTGTCAAGGATGCTTTAATTGGAGTTAGAGAAACCTTACAA GGAGAGACGCTCAAGAGTTCCATCTGCACGGTTGCTGTGGTTGGAGTTGGTGAGGCATTTCACGTTCTAGATCAAGAGACAGTACAGCAACTGATCGATG CATTTGAAATTGTAAAGGAGCCAGAGGCTCCTGCCGCTGAACCTGATGCTGATGCTGCAGTTGATGCTGATCCTCCTGCGGGTCCTCCAGCTGAAGGGGC AGCGCCAATGGACATATGA
AA sequence Show only first row Show all	>Lus10007396 pacid=23157954 polypeptide=Lus10007396 locus=Lus10007396.g ID=Lus10007396.BGIv1.0 annot-version=v1.0 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSFTYE SPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYEGFAIGSRSQAAKTYLERRFKSFMESSRDDLVKDALIGVRETLQ GETLKSSICTVAVVGVGEAFHVLDQETVQQLIDAFEIVKEPEAPAAEPDADAAVDADPPAGPPAEGAAPMDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007396 [exp]	0	1
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10005333 [exp]	1.4	0.9447
AT5G06550			unknown protein		Lus10029343 [exp]	1.7	0.9417
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10017397 [exp]	3.0	0.9332
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010923 [exp]	4.5	0.9394
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10003171 [exp]	4.9	0.9361
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10030482 [exp]	6.5	0.9378
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	6.7	0.9458
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	8.1	0.9298
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10001713 [exp]	10.0	0.9212
AT4G39880			Ribosomal protein L23/L15e fam...		Lus10041700 [exp]	13.0	0.9398

Compare expression of checked genes

Lus10007396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.