Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19600 518 / 0 pfkB-like carbohydrate kinase family protein (.1) AT4G27600 66 / 1e-11 NARA5 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) AT5G03300 64 / 4e-11 ADK2 adenosine kinase 2 (.1) AT3G09820 56 / 2e-08 ADK1, ATADK1 adenosine kinase 1 (.1.2) AT4G10260 54 / 8e-08 pfkB-like carbohydrate kinase family protein (.1) AT1G17160 49 / 2e-06 pfkB-like carbohydrate kinase family protein (.1.2) AT1G66430 49 / 2e-06 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024268 [exp] 729 / 0 AT1G19600 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026867 [exp] 76 / 6e-15 AT4G27600 585 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Lus10013645 [exp] 75 / 2e-14 AT4G27600 580 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Lus10023197 [exp] 54 / 1e-07 AT5G03300 590 / 0.0 adenosine kinase 2 (.1) Lus10040417 [exp] 50 / 1e-06 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10023532 [exp] 50 / 1e-06 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10009220 [exp] 48 / 8e-06 AT5G03300 501 / 7e-176 adenosine kinase 2 (.1) Lus10028517 [exp] 48 / 1e-05 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026199 [exp] 48 / 1e-05 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G034000 [exp] 569 / 0 AT1G19600 556 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.005G229100 [exp] 565 / 0 AT1G19600 558 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.013G078600 [exp] 73 / 5e-14 AT4G27600 588 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Potri.010G224300 [exp] 59 / 2e-09 AT5G03300 620 / 0.0 adenosine kinase 2 (.1) Potri.008G038100 [exp] 54 / 5e-08 AT5G03300 622 / 0.0 adenosine kinase 2 (.1) Potri.004G089300 [exp] 54 / 7e-08 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.011G114100 [exp] 50 / 1e-06 AT1G17160 474 / 8e-168 pfkB-like carbohydrate kinase family protein (.1.2) Potri.017G126300 [exp] 46 / 2e-05 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.009G046200 [exp] 43 / 0.0003 AT5G58730 432 / 6e-152 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10007397 pacid=23157955 polypeptide=Lus10007397 locus=Lus10007397.g ID=Lus10007397.BGIv1.0 annot-version=v1.0 ATGGGAGCTGAAGGACTGCTGCAGACCTCAAGGAACAGTGAGATGGCTCCTCATCGCCCTCTAATTCTCGGACTTCAACCGGCGGCGCTCGTCGACCACG TGGCTCGCGTCGATTCATCCTTACTGGATCAAATCCCCGGCGACCGCGGCGGCTCTATTCCTGTTGCAGTTGAAGAGCTCGAGTTTATACTGAAGGAGGT GAAGACTCACATACTTGCCTCTCCTCCTAATGGTTGTTCCTCTTTAGTGAAGACAATTGCAGGAGGAAGCGTGGCCAATACGATCCGTGGCCTGAGTTCT GGTTTCGGGTTATCTTGTGGGATCATCGGGGCTTGTGGGGATGATGATCAAGCTAAGCTGTTCGTTACCAATATGACCTTTCATGGAATTAACCTATCAA GGTTGAGATCCAAGAAGGGACTTACAGCACAGTGCGTTTGCCTTGTGGATGAGTTGGGAAATCGGACCATGCGACCTTGCCTTTCAAATGCTGTCAAAGT TCAGGGTGATGAATTGGCCAATGAGGATTTCATCGGCTCCAAGTGGCTGATAATGAGGTATTCCATATTCAATCTGGAGGTTATCAAAGCAGCAATAAGG GTTGCAAAGCTAGAGGGTGTTTCAGTTTCATTGGATTTAGCTAGTTTTGAGATGGTTAGGAACTATAGATTACCTCTAATGGAATTGCTTCAATCTGGAG ATGTAGACCTCTGTTTTGCTAATGAAGATGAAGCAACGGAGCTACTCAGAGGGGAGGAAAATGGTGATCATGAAGCTGCACTTGAATTCTTGGCCAAACA CTGCGAATGGGCTGTAGTGACACTTGGTGGAAATGGCTGCATCGCAAAGCATGGAAAAGAGGTTGCTCGAGTTGCAGCAATCAGAGAATCGAAGGCAGTT GATGCTACGGGAGCAGGGGACCTTTTCGCAAGTGGGTTCTTGTACGGACTGACAAAGGGGTTATCTCTTGAGGAGTGCTGTAAGATTGGTACATGCAGTG GTGGCTCTGTGATTCGGTCTCTTGGAGGTGAAGTGACTCCAGAGAATTGGCAATGGATGTACAGGCAAATGCAAGGCAAGGGCCTCCCAGTTCCGGAAAT CCTCAATTAA
AA sequence Show only first row Show all	>Lus10007397 pacid=23157955 polypeptide=Lus10007397 locus=Lus10007397.g ID=Lus10007397.BGIv1.0 annot-version=v1.0 MGAEGLLQTSRNSEMAPHRPLILGLQPAALVDHVARVDSSLLDQIPGDRGGSIPVAVEELEFILKEVKTHILASPPNGCSSLVKTIAGGSVANTIRGLSS GFGLSCGIIGACGDDDQAKLFVTNMTFHGINLSRLRSKKGLTAQCVCLVDELGNRTMRPCLSNAVKVQGDELANEDFIGSKWLIMRYSIFNLEVIKAAIR VAKLEGVSVSLDLASFEMVRNYRLPLMELLQSGDVDLCFANEDEATELLRGEENGDHEAALEFLAKHCEWAVVTLGGNGCIAKHGKEVARVAAIRESKAV DATGAGDLFASGFLYGLTKGLSLEECCKIGTCSGGSVIRSLGGEVTPENWQWMYRQMQGKGLPVPEILN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19600			pfkB-like carbohydrate kinase ...		Lus10007397 [exp]	0	1
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10036272 [exp]	2.6	0.8658
AT1G14140			Mitochondrial substrate carrie...		Lus10030443 [exp]	3.7	0.8608
AT5G18610			Protein kinase superfamily pro...		Lus10041426 [exp]	4.2	0.8528
AT2G48020			Major facilitator superfamily ...		Lus10008183 [exp]	5.3	0.8382
AT1G32250			Calcium-binding EF-hand family...		Lus10035383 [exp]	7.4	0.7762
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10018153 [exp]	13.9	0.7924
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039925 [exp]	14.4	0.8222
AT5G19875			unknown protein		Lus10034527 [exp]	14.4	0.8503
AT1G70480			Domain of unknown function (DU...		Lus10029147 [exp]	14.5	0.8118
AT1G53050			Protein kinase superfamily pro...		Lus10000584 [exp]	16.1	0.7767

Compare expression of checked genes

Lus10007397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.