Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G40087 46 / 7e-06 Plant transposase (Ptta/En/Spm family) (.1) AT3G30200 45 / 2e-05 Plant transposase (Ptta/En/Spm family) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012637 [exp] 152 / 5e-46 ND 39 / 0.002 Lus10022000 [exp] 148 / 9e-46 ND / Lus10022515 [exp] 129 / 1e-36 ND 38 / 0.008 Lus10042943 [exp] 119 / 5e-34 ND 40 / 3e-04 Lus10038590 [exp] 117 / 3e-33 ND / Lus10004526 [exp] 85 / 1e-19 AT3G52490 75 / 1e-14 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025261 [exp] 76 / 6e-18 ND / Lus10002726 [exp] 71 / 1e-14 ND 37 / 0.008 Lus10019371 [exp] 57 / 7e-11 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03004 [flax] [poplar] Transposase_24 Plant transposase (Ptta/En/Spm family)
Representative CDS sequence Show only first row Show all	>Lus10007402 pacid=23175814 polypeptide=Lus10007402 locus=Lus10007402.g ID=Lus10007402.BGIv1.0 annot-version=v1.0 ATGGGGACCTTACGAAGAAGCGGAGGGAAGATCGCCAAAAAATTTGGGATAAAAAGTGCTATAAGGAGGGTAAAAAGGAGGACAACTACAAGAGAATACC AAAAATGTCGAGTCGAGTATTCATCGAAGAAAACTGAGAACCAAGGGAAGCAAAAAATTTACCACACTTCTAGGTCCAAGAGTTTCGTGGCAAAGTCAAA AGATATGGAGTTGAAAAGAGAGCCTATTAGGGGAGAGTTGTATCGAGAAACTCATAAGAGAAAAGGAGGCGGATACCCGAACAGTCTGACAAGAATAGCT GTGGAACAAGTTGACAGGTACATCAACGACCTTGAGACACATATATACATTAGCCCAAATGATGTTGTAGGTCGTCTTTTTCAGGGTAAGGAGCACCCTG GCCGTGTTCACGGTCTTGGACTTGGACCACTCCCATCACATTTTGAAAGGTCTTTGATAGCTATAGCTCATAGAGGTCTACATCGACCTCTAGGTGTTTT GATAATGTGTCGATGGAGCAGTTCCAACAATTTTCTACAAGGGTCTTTGATAGCTATAGCTCATAGAGGTCTACATCGACCTCTAGGTGTTTTGATAATG TGTCGATGGAGCAGTTCCAACAATTTTCTACAAGGGTAA
AA sequence Show only first row Show all	>Lus10007402 pacid=23175814 polypeptide=Lus10007402 locus=Lus10007402.g ID=Lus10007402.BGIv1.0 annot-version=v1.0 MGTLRRSGGKIAKKFGIKSAIRRVKRRTTTREYQKCRVEYSSKKTENQGKQKIYHTSRSKSFVAKSKDMELKREPIRGELYRETHKRKGGGYPNSLTRIA VEQVDRYINDLETHIYISPNDVVGRLFQGKEHPGRVHGLGLGPLPSHFERSLIAIAHRGLHRPLGVLIMCRWSSSNNFLQGSLIAIAHRGLHRPLGVLIM CRWSSSNNFLQG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10007402 [exp]	0	1
AT1G73120			unknown protein		Lus10022961 [exp]	2.6	0.8994
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	3.5	0.8960
AT5G11280			unknown protein		Lus10026797 [exp]	4.9	0.8181
					Lus10035120 [exp]	6.3	0.8819
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10024978 [exp]	7.9	0.8118
AT3G05610			Plant invertase/pectin methyle...		Lus10006940 [exp]	17.9	0.7582
					Lus10017551 [exp]	18.1	0.8916
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10042404 [exp]	19.9	0.7560
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10011582 [exp]	20.1	0.7771
					Lus10022658 [exp]	27.4	0.6960

Compare expression of checked genes

Lus10007402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.