Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60490 142 / 9e-41 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G03170 142 / 1e-40 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT2G20520 104 / 2e-26 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT5G44130 104 / 2e-26 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT1G03870 98 / 8e-24 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT2G04780 80 / 3e-17 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT3G60900 62 / 2e-10 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT2G45470 61 / 3e-10 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G46550 60 / 5e-10 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT4G12730 48 / 5e-06 FLA2 FASCICLIN-like arabinogalactan 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036115 [exp] 318 / 2e-109 AT5G03170 151 / 4e-45 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002978 [exp] 161 / 4e-48 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002985 [exp] 158 / 8e-47 AT5G60490 180 / 4e-56 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10036111 [exp] 157 / 1e-46 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036113 [exp] 155 / 2e-45 AT5G03170 173 / 6e-53 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036114 [exp] 150 / 2e-43 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036112 [exp] 143 / 8e-41 AT5G03170 197 / 1e-62 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002984 [exp] 136 / 3e-38 AT5G03170 192 / 1e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10019929 [exp] 133 / 3e-37 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G320800 [exp] 196 / 1e-61 AT5G60490 189 / 5e-60 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.015G129400 [exp] 172 / 1e-52 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G127900 [exp] 166 / 4e-50 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.004G210600 [exp] 157 / 3e-46 AT5G60490 188 / 5e-59 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G014200 [exp] 155 / 9e-46 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151366 [exp] 155 / 2e-45 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.009G012200 [exp] 154 / 5e-45 AT5G60490 167 / 5e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151300 [exp] 154 / 6e-45 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.015G013300 [exp] 153 / 8e-45 AT5G60490 176 / 3e-54 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G015032 [exp] 153 / 1e-44 AT5G60490 179 / 2e-55 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10007404 pacid=23175827 polypeptide=Lus10007404 locus=Lus10007404.g ID=Lus10007404.BGIv1.0 annot-version=v1.0 ATGGTTTTTTGCAATGCAGGACTGTCAAGGTCTCCCCTCCTTGGGCTTGGAACATCTGGAAGACCAGGAACGCCCTCATCTTTCGTAAGAAGCGCTCCTT TCCTCGTATTACATCAGAGATTGCTTCAACAAATGCTTGTGATTGGAATTTCGCTTGCTTTAGAGTCCAACCCTCTCCGCCCCCCACTACCGTCCATCCT CCCAACCATGTCGCGGCAGCTGGGTCCCATCAACGTCGTCAAGATACTTAAGAAGGCCGGTAGCTTCAAGGTGTTCGTCCGTCTCTTGAAAACAACACAG CTTGACAGCAACCTCAATTCCCAGCTCGACGACACCAACAACGGCATCACCATCTTAGCTCCCACCGACGCCGCTTTCGCCAAGCTCAAACGTGGGACCC AGCTAGGATCGTTGACCCGCCAGGAGAAGCTCCAGCTAACACAGTTCCATATTATCCCTGTCTTCATCTCCCGCTCCGACTTCGAGTCCGTTAGCAGCCC CATGCCTACCCACGCCGGCTCTGGCGACCTTCTGCAGCTCAATGTGACGGGGGCTTCAACCGGACCTAACGCTGCTGTGAGTCTGACAACTGGGGTGACC AACACCACGCTGTCCGATACCGTCTACATGGACGACAGTCATCTCGCGATTTACCAGGTTGACAACGTGCTTCTTCCTATGTCAATTGTCGGTGATCCTA AGGGGGCGGAGGCGGCAGGGGCTGGGGCGGCGGCGACGACAGTCATCTCGCGATTTACCAGGTTGACAACGTGCTTCTTCCTATGTCAATTGTCGGTGAT CCTAAGGGGGCGGAGGCGGCAGGAGCTGTGGCGGCGTCGGAAGCAAGTAGTAGCGCGGAGGGAGATGCTGTTGACAACGACAATGGTGATGATGATGGTA GCGACGATGGGGTGA
AA sequence Show only first row Show all	>Lus10007404 pacid=23175827 polypeptide=Lus10007404 locus=Lus10007404.g ID=Lus10007404.BGIv1.0 annot-version=v1.0 MVFCNAGLSRSPLLGLGTSGRPGTPSSFVRSAPFLVLHQRLLQQMLVIGISLALESNPLRPPLPSILPTMSRQLGPINVVKILKKAGSFKVFVRLLKTTQ LDSNLNSQLDDTNNGITILAPTDAAFAKLKRGTQLGSLTRQEKLQLTQFHIIPVFISRSDFESVSSPMPTHAGSGDLLQLNVTGASTGPNAAVSLTTGVT NTTLSDTVYMDDSHLAIYQVDNVLLPMSIVGDPKGAEAAGAGAAATTVISRFTRLTTCFFLCQLSVILRGRRRQELWRRRKQVVARREMLLTTTMVMMMV ATMG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10007404 [exp]	0	1
AT5G48850		ATSDI1	SULPHUR DEFICIENCY-INDUCED 1, ...		Lus10011872 [exp]	1.7	0.8513
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033172 [exp]	3.2	0.8476
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005740 [exp]	4.2	0.8357
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10000612 [exp]	4.4	0.7837
					Lus10017698 [exp]	8.9	0.8161
AT4G08250	GRAS		GRAS family transcription fact...		Lus10020857 [exp]	8.9	0.7814
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	9.5	0.8291
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10039213 [exp]	10.8	0.8148
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034666 [exp]	11.1	0.8310
					Lus10008841 [exp]	14.7	0.7599

Compare expression of checked genes

Lus10007404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.