Gene [FLAX] | FIBexDB

Lus10007405 [FLAX]

External link

JGI Phytozome v13

[genome browser]

Symbol

Arabidopsis homologues

Show only best Show top 10

No hit found

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10004579 [exp]	72 / 2e-16	AT1G78550	66 / 8e-13	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10030149 [exp]	69 / 3e-14	AT5G05340	405 / 8e-142	Peroxidase superfamily protein (.1)
Lus10016291 [exp]	57 / 9e-11	ND	/
Lus10029505 [exp]	45 / 5e-06	AT3G21640	409 / 5e-144	ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
Lus10029539 [exp]	44 / 6e-06	AT3G56570	45 / 7e-06	SET domain-containing protein (.1)

Poplar homologues

Show only best Show top 10

No hit found

PFAM info

Representative CDS sequence

Show only first row Show all

>Lus10007405 pacid=23175823 polypeptide=Lus10007405 locus=Lus10007405.g ID=Lus10007405.BGIv1.0 annot-version=v1.0

ATGGTGGTCATAGAGGAGGAAGATGCATCCATCCTTAAAGATAATGTAGCCAATAGGGATGAAAAGCTAGAAGTGCCTCAATGGGATGAGAGTGATGTCC

TTTTTAACTTCTCAGAGGATGAAGGTGAAGATACATCAATCACCATGGAAGTTCAAGCTAATGTGAAAGTGAGCCTAAAGATTGCGAATGGGATGGAAGT

TGATCGCCCGAATAACTGTGAAGTTATTCCGACAACACAAGTGTCGTTTGTGTCCGAAGGTCCCTCTCGCTATGCTTCTACTCGAATTCGTCAACACGGG

GCTGGCCGTTCATCTTCAATTGTGCTCATTCCGCGACTCAAAAAGGGAAGAACGGCGTGCAGCTCCACTTTTCCTCCATTCCTCGACGCTCAAGGGGCTG

AACGGCGTGCATCAGTGCACGCCGTGCTCATGTTTCAACGCCGTGCTTCTTGA

AA sequence

Show only first row Show all

>Lus10007405 pacid=23175823 polypeptide=Lus10007405 locus=Lus10007405.g ID=Lus10007405.BGIv1.0 annot-version=v1.0

MVVIEEEDASILKDNVANRDEKLEVPQWDESDVLFNFSEDEGEDTSITMEVQANVKVSLKIANGMEVDRPNNCEVIPTTQVSFVSEGPSRYASTRIRQHG

AGRSSSIVLIPRLKKGRTACSSTFPPFLDAQGAERRASVHAVLMFQRRAS

DESeq2's median of ratios [FLAX]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007405 [exp]	0	1

Lus10007405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.