Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45260 275 / 1e-87 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G03150 272 / 1e-85 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT4G02670 263 / 4e-83 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT5G60470 262 / 2e-82 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G50700 260 / 1e-81 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT5G66730 258 / 2e-80 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G13810 258 / 2e-80 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT1G55110 257 / 2e-80 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT1G03840 256 / 1e-79 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT2G02080 255 / 1e-79 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036116 [exp] 596 / 0 AT5G03150 307 / 8e-100 JACKDAW, C2H2-like zinc finger protein (.1) Lus10008396 [exp] 273 / 4e-85 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10041723 [exp] 270 / 2e-84 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10019927 [exp] 266 / 2e-83 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10018633 [exp] 264 / 4e-83 AT1G03840 365 / 2e-122 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10026497 [exp] 265 / 7e-83 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10004840 [exp] 263 / 1e-81 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10010820 [exp] 254 / 3e-81 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10035092 [exp] 261 / 2e-80 AT2G02070 334 / 3e-107 indeterminate(ID)-domain 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129300 [exp] 296 / 8e-95 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.016G088500 [exp] 293 / 1e-93 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.017G017100 [exp] 269 / 8e-85 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G135000 [exp] 266 / 2e-83 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.018G052200 [exp] 265 / 2e-82 AT1G55110 339 / 1e-111 indeterminate(ID)-domain 7 (.1) Potri.005G125600 [exp] 264 / 3e-82 AT5G66730 429 / 4e-146 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.007G028800 [exp] 263 / 7e-82 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.002G208444 [exp] 263 / 2e-81 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1) Potri.006G227600 [exp] 261 / 6e-81 AT3G45260 308 / 9e-100 C2H2-like zinc finger protein (.1) Potri.008G142500 [exp] 261 / 7e-81 AT2G02070 407 / 6e-136 indeterminate(ID)-domain 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007409 pacid=23175817 polypeptide=Lus10007409 locus=Lus10007409.g ID=Lus10007409.BGIv1.0 annot-version=v1.0 ATGGCGACCAACCGATTCATATGCGAGATATGCAACAAGGGGTTCCAAAGGGACCAGAACCTGCAGCTACACAGGAGAGGTCACAACCTTCCGTGGAAAC TGAAGCAGAGGTCGAAGACGGAAGTTGTAAAGAGAAAAGTATACATCTGCCCTGAAAAGACATGCGTCCACCATGACCCGGCTAGGGCACTCGGAGACTT GACAGGAATCAAGAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAATGGAAGTGCGACAAGTGCTCTAAGAAGTACGCTGTTCAGTCCGATTGGAAGGCC CACAGCAAGATTTGCGGCACCCGCGAGTACCGATGTGACTGCGGCACCCTCTTCTCCAGGAAGGATAGCTTCATAACACATAGAGCCTTCTGCGACGCCT TAGCGGAAGAAAGTGCAAGATTCACATCGGTATCAGCTGCTAACTTCCGCAACGATTTGATGAACCCGTCATTACTACAGCACCAATCCGGCGCTGGATT ATCTCAATTCAGCACCATGTTTAGGCCAGAACTCTCTGCCGGATTAGAAAGCAACGTGGAAGGCGGCAATAATATTATGCAAAACCCAAGGAATAATAAG GTTGGTAATAACAACAATATCAATAATAATATGCCGATGTGGTTGGACCCCATGGCGACGTCGGCTGGTGGCAGCGGAGGTGGTAGTAGTAATAACAACA ACGGGCAAAACCCATTCGGGTTTCCGCAGGAGCTGGTTCAACCAAACATGTTTGGTTCGATTAATCAGTGGGCGCCGCTCAGCAACAACAACAACAACAA CAAGTACCAAGAAGGAGCAGCGTATGGTAGTACAGGTGGAAGCTTATCGGGGATGGGACTGACACGGGGGACGATAATGAAAGAGGAAGAAGAAAACAAC AACAACAAAAGAGACATGTTGTTGTCATCATCCTCAGAAACAGCTCTTTACTCTCACCACCACCACCACCAAGCGGCGGCAACGGCTCACATGTCCGCCA CCGCGTTGCTTCAGAAAGCAGCTCAGATGGGGTCCACCAGGAGCAGCAACGCCAACGCCGGTACTGGTGGGGCTGGACTTATGATGACCCCTTCTCTATC GGCTATGATGCCTGGTTTCGGAAACAACAATAACAATAAGAGTAGTAGTAGCGGGGAGTCACTCAAGTTTCTGAGCGGAGGGAATCAGCTGAATGAGTTG ATGAGTTCTGTTTCATCGTCGACGACGGAGAGGGTGATAATGAGCGAGTTCGGAGGAGGAGAAGCAGCAGCCGGTGGTTTTACAAGAGACTTTCTTGGAG TGGGAGCTGGCGAGAATAATGAAGGTGGGAGGATGCCATTAATGCTCCAGCAGGAGCTCGCGAGGTTCGCTGCTATGGGATCATCCTCGTCTAATAATAA TTCAGCTGCTGCTGCTATGGAGCTTCAGCCTAATTTCAGGTCTTCATCATCAGCTGGCCTTAACTGA
AA sequence Show only first row Show all	>Lus10007409 pacid=23175817 polypeptide=Lus10007409 locus=Lus10007409.g ID=Lus10007409.BGIv1.0 annot-version=v1.0 MATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKTEVVKRKVYICPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKA HSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTSVSAANFRNDLMNPSLLQHQSGAGLSQFSTMFRPELSAGLESNVEGGNNIMQNPRNNK VGNNNNINNNMPMWLDPMATSAGGSGGGSSNNNNGQNPFGFPQELVQPNMFGSINQWAPLSNNNNNNKYQEGAAYGSTGGSLSGMGLTRGTIMKEEEENN NNKRDMLLSSSSETALYSHHHHHQAAATAHMSATALLQKAAQMGSTRSSNANAGTGGAGLMMTPSLSAMMPGFGNNNNNKSSSSGESLKFLSGGNQLNEL MSSVSSSTTERVIMSEFGGGEAAAGGFTRDFLGVGAGENNEGGRMPLMLQQELARFAAMGSSSSNNNSAAAAMELQPNFRSSSSAGLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007409 [exp]	0	1
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10036116 [exp]	1.0	0.9589
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	2.0	0.9432
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	5.5	0.9264
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10029110 [exp]	8.8	0.8977
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10006317 [exp]	11.7	0.9189
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	12.5	0.9221
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10024431 [exp]	13.1	0.8671
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10014783 [exp]	13.6	0.8919
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	13.9	0.9158
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10034020 [exp]	14.5	0.9040

Compare expression of checked genes

Lus10007409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.