Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007413 pacid=23180214 polypeptide=Lus10007413 locus=Lus10007413.g ID=Lus10007413.BGIv1.0 annot-version=v1.0 ATGCTTGAGAAGAAGAGGGATGCTGAGCTACAACAAGACTTTGAAGAAGGGGATAGGCTTCCTATTCTCCGTTATCAGAGTTGCCCACTTGTTTGTCAAG CTGCTCAGAATTGTGTGGGCAGTGTCACTACACATATTGGAAAGGCAAAAATTGGCGACGTACGCGAGTTCGTTCGTTCAAAGCTTATTGAACTCTCTAC CGTGGCAACACCAATCCAGTTCCCCAACCGGGCCTCGCATGTGCATCCTGGAACTCCCGTAGAAGCACCACCGATGCCACCTGTTGCAGTGTCTACACCA CCCGGCCAAGTTGTTGCCACAAACTCTTTCGTTGTTGACCGCTTTAATGTCGACGATGACATTCCCCTTGCATCACTGTTCCGAACGAGGAAAACCAATC ACTCACCACAGCCTGTGAACCCCACCTTTCCACTTCCCTCTTCTTCCAAGCTAGGCAACTTAATGACACCAGCTCAAGCACTTTCGGCTACCCTGGCTTC TTCTCCATTGGCCACTGTCAAACAAGAGAAGCTACTCCAAAAAACAACCCCTGCTCGCGTCAAGAAGGAGAAGCCCGATACCACGCTGCCGCCTGAACTT CCCCAGCATTCTGTTTCTAGCCGTGGTAGGCCGCGTACAAGGAGACGTCTGTTTGAATCCTAA
AA sequence Show only first row Show all	>Lus10007413 pacid=23180214 polypeptide=Lus10007413 locus=Lus10007413.g ID=Lus10007413.BGIv1.0 annot-version=v1.0 MLEKKRDAELQQDFEEGDRLPILRYQSCPLVCQAAQNCVGSVTTHIGKAKIGDVREFVRSKLIELSTVATPIQFPNRASHVHPGTPVEAPPMPPVAVSTP PGQVVATNSFVVDRFNVDDDIPLASLFRTRKTNHSPQPVNPTFPLPSSSKLGNLMTPAQALSATLASSPLATVKQEKLLQKTTPARVKKEKPDTTLPPEL PQHSVSSRGRPRTRRRLFES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007413 [exp]	0	1
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10013477 [exp]	1.4	0.8001
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10033954 [exp]	1.7	0.7861
AT2G44430			DNA-binding bromodomain-contai...		Lus10021861 [exp]	4.5	0.7931
AT2G44430			DNA-binding bromodomain-contai...		Lus10010335 [exp]	5.7	0.7733
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10003789 [exp]	15.5	0.7033
AT4G40045			unknown protein		Lus10043427 [exp]	16.2	0.6919
AT1G51940			protein kinase family protein ...		Lus10027677 [exp]	16.7	0.6790
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10010463 [exp]	17.3	0.7493
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	18.0	0.7157
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10035713 [exp]	18.2	0.7479

Compare expression of checked genes

Lus10007413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.