Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027613 [exp] 298 / 3e-97 ND / Lus10006886 [exp] 232 / 6e-72 ND / Lus10039353 [exp] 239 / 1e-71 ND / Lus10007416 [exp] 173 / 4e-50 ND / Lus10026444 [exp] 131 / 2e-33 ND / Lus10017801 [exp] 121 / 4e-32 ND / Lus10023004 [exp] 110 / 9e-28 ND / Lus10006920 [exp] 100 / 1e-22 ND / Lus10039535 [exp] 97 / 1e-21 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007415 pacid=23180219 polypeptide=Lus10007415 locus=Lus10007415.g ID=Lus10007415.BGIv1.0 annot-version=v1.0 ATGGGAATGAGATATGACCCAACTGCCATCCCGCCTGAACTTGAGCCTTTCGGTTCTGGCATATCTGACTTGGACTACGGCCCCAACCACTGCACTTGCC TATTCCGCTTGGTCTATTTTTGGCGTGACCCCGACGACCTCCCAAACTATGTCGAACCCTCACTATACACCCAGTGGATAGACATAAACGTAAACGTCGT TTCTTTGCCCCCAATTTCATCCCGGTGCTCTTACGCTATAACACTATTTGACACTCTCCTTCAGGAAACTCGTGTTGAAGGTTTTATTGCTCCGAACCAA GCTCGGGAAGCTCTTACGCTGCTCATTGTTGGGACCATTTACAAGTTTGATAGGCCAACTTTGATACCAGCAAGAACGATGCTCCGTTCATGCCCTGGAG TTTCCATGCTTGTTGTATACCCAGAATGTCTATTGTACCCAGTTTATGAAATCCCAACGAAACCGTTCTTTCCAAGGGAGGTCTTCTCCATCGTCCCCGC GGCTAACCTATCCTCCCGACATACATCACGCATGACAACCTCACGTTACGGTAGTTTGCATGTTGCTCATTGTTCTACCCGTGTGCATAACAATTATAAA ACCCTCTTACGTGACCTTTTCCGTTGGTACCCTACAGACATTATCGGTCGCCTTGTGTCCATGACCGACCCTGTGCCGACATCTGATGGTGCACTTGCTT TCACGGTTGTCGTTGATGATCCATGTTTATATCGTGTCTCTGTCCGCTACTTGAGATATATTCCACCACAGGGATTTTCAATCCAAAGCATAGCCGCAAT TGAGAGCATGCGGCATGTACTTTGCATCCTTACTTGTGTCGTCGTTTGTGATCCTCCTGGGTTACAAGCACTGTCTAATTTGTTTGCTTCCGCCTACAGA TTTGCACACAGGCATCTCCCTGTTCAACTGGTCAGCCCGACATCATCCCAATCCTATACATTTATTCGTGGTGCGTTGCCGCGTAAACTCCCGTTGTCCG CACTGCTCTTGGAACCAGGAACCACTCCCGCCGAGACTGAGGAACCTTTTTGGTGCATGGTCCATATAGCCGACGTCGAACATCACGTCGACAATATAGT CTATGCTGGCAAACGTCCTAAGTACGGTGTCGTTGTGCGTTGCGCAGACGCGACAACCGCTGTCAATTTCCTCTTCCCAAGTCCGGCTGCAAACCTCCTT CTCAAAATGTGTCCCCATGAGTTTGTTGCGTTGCCTTGTGATGCGGAGTCAGCATTGCTCAAAAGCCTCCTTGACCGCAACTTCATCATCGAGGCACGCT CCGGAAGAGACGAGAGTACTCCTCGTGCTCAGTTTGTTGTCACAAACCTCTTTGACCCAGTTGCTGCCTTCTATTGA
AA sequence Show only first row Show all	>Lus10007415 pacid=23180219 polypeptide=Lus10007415 locus=Lus10007415.g ID=Lus10007415.BGIv1.0 annot-version=v1.0 MGMRYDPTAIPPELEPFGSGISDLDYGPNHCTCLFRLVYFWRDPDDLPNYVEPSLYTQWIDINVNVVSLPPISSRCSYAITLFDTLLQETRVEGFIAPNQ AREALTLLIVGTIYKFDRPTLIPARTMLRSCPGVSMLVVYPECLLYPVYEIPTKPFFPREVFSIVPAANLSSRHTSRMTTSRYGSLHVAHCSTRVHNNYK TLLRDLFRWYPTDIIGRLVSMTDPVPTSDGALAFTVVVDDPCLYRVSVRYLRYIPPQGFSIQSIAAIESMRHVLCILTCVVVCDPPGLQALSNLFASAYR FAHRHLPVQLVSPTSSQSYTFIRGALPRKLPLSALLLEPGTTPAETEEPFWCMVHIADVEHHVDNIVYAGKRPKYGVVVRCADATTAVNFLFPSPAANLL LKMCPHEFVALPCDAESALLKSLLDRNFIIEARSGRDESTPRAQFVVTNLFDPVAAFY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007415 [exp]	0	1
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	2.2	0.9825
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	3.2	0.9812
AT5G03260		LAC11	laccase 11 (.1)		Lus10023189 [exp]	3.9	0.9801
AT4G34180			Cyclase family protein (.1)		Lus10001509 [exp]	4.2	0.9772
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039541 [exp]	4.5	0.9781
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10023048 [exp]	5.2	0.9567
AT4G34180			Cyclase family protein (.1)		Lus10031453 [exp]	5.3	0.9757
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	5.9	0.9774
AT4G02690			Bax inhibitor-1 family protein...		Lus10004078 [exp]	8.1	0.9706
AT2G14095			unknown protein		Lus10010746 [exp]	8.2	0.9485

Compare expression of checked genes

Lus10007415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.