Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027613 [exp] 247 / 4e-79 ND / Lus10007415 [exp] 205 / 2e-62 ND / Lus10039353 [exp] 194 / 1e-56 ND / Lus10006886 [exp] 154 / 1e-43 ND / Lus10026444 [exp] 140 / 3e-38 ND / Lus10017801 [exp] 118 / 7e-32 ND / Lus10038642 [exp] 100 / 1e-25 ND / Lus10029472 [exp] 85 / 2e-18 ND / Lus10027118 [exp] 80 / 5e-18 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007416 pacid=23180228 polypeptide=Lus10007416 locus=Lus10007416.g ID=Lus10007416.BGIv1.0 annot-version=v1.0 ATGTCAGTTGCTTGCATTTGTGTTTGGTCAAATTGCTTTCAGTTTCTTCTTGATGTCTTTCTCTTCTTTGCAGCGTTGGAGCACTTTGCTTGTGATGTCG ACGACATAGACTTCGGTGTTAACATAGGTTGTTGTCTCCTGCGCTTGGTTCACTCTTGGAGAGAACCGTTGGATGATTCACCCATCTTTGATGCACCTCT TCTGAGCCAATGGATCGATTATAAGGAAAATCGAATTGAGGGCTACACCCACCCAGACGATGTTGAGGCAACTATGGAACTGCTTTCCAATGGCACCCTT TACAAGGTACTTAACCCGTGTATCATTCCAGCTAGAGCCGAGCTTCGCTCATGCCCCGGCGATTTCTACCTCGCTATTCATCCCAACCATCTGTTGTCAC CTACTCGAGAAAACCCTTTCAAGCCCTTTTTCCCAAAAGATGTGTACAACATCGTTCCCGCTGTGACACTGTGGCCCCTGCGAGCTTCGCGAACTACCTC TTCAGGCATGCTCTTCGCTCACATTCTCTATTGGCCTCCTCAACTAGCTAACTATGGTTGTACGAATAGGGTGTTTCGGGTGTCAGTGCACTTCCCTTAC TTGTTGCCGCCTGAGGGGTTTTCCATTAACGACATTGCAACCGCTGAACAGCTGCGACCTATAGTCTGTATTCTCACTTGTGTTGTCATATGCGATCCGC CTGGAAATGCTAATTTCCCTCCATTCATTGGCAGGTATTCTCACACCCACCTACCTGTACGCTTTGTCAATCTAGATGCGCCACATACTTTCACATGTAT TCGAGGCGTGCTTCCTAGAAAGATGCAGCTGGCTACACTCATAGAACAGGCTCTTGTGATGCCTCCAGAAGCCAATGAAACAGTTTGGTGCCTCCTCCGT ATCCTTCAACTCGATCAAAGCGGTGACAACATTCTCTTTTCTAGGCGCTCCCCCAGGTCTCCTATGTTTCCCATTGACTAA
AA sequence Show only first row Show all	>Lus10007416 pacid=23180228 polypeptide=Lus10007416 locus=Lus10007416.g ID=Lus10007416.BGIv1.0 annot-version=v1.0 MSVACICVWSNCFQFLLDVFLFFAALEHFACDVDDIDFGVNIGCCLLRLVHSWREPLDDSPIFDAPLLSQWIDYKENRIEGYTHPDDVEATMELLSNGTL YKVLNPCIIPARAELRSCPGDFYLAIHPNHLLSPTRENPFKPFFPKDVYNIVPAVTLWPLRASRTTSSGMLFAHILYWPPQLANYGCTNRVFRVSVHFPY LLPPEGFSINDIATAEQLRPIVCILTCVVICDPPGNANFPPFIGRYSHTHLPVRFVNLDAPHTFTCIRGVLPRKMQLATLIEQALVMPPEANETVWCLLR ILQLDQSGDNILFSRRSPRSPMFPID

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10007416 [exp]	0	1
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000794 [exp]	1.4	0.9781
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10042626 [exp]	8.7	0.9673
					Lus10009719 [exp]	9.0	0.9789
AT5G04347			Plant self-incompatibility pro...		Lus10022824 [exp]	14.6	0.8537
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	15.6	0.9776
					Lus10025056 [exp]	18.0	0.9776
AT5G64820			unknown protein		Lus10025572 [exp]	20.1	0.9776
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	22.0	0.9776
					Lus10007403 [exp]	23.8	0.9776
AT2G21720			Plant protein of unknown funct...		Lus10007431 [exp]	25.5	0.9776

Compare expression of checked genes

Lus10007416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.