Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59510 361 / 2e-122 Leucine-rich repeat (LRR) family protein (.1) AT5G66330 200 / 9e-60 Leucine-rich repeat (LRR) family protein (.1) AT2G15320 190 / 2e-56 Leucine-rich repeat (LRR) family protein (.1) AT4G20140 125 / 9e-31 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65700 123 / 4e-30 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G62230 123 / 5e-30 ERL1 ERECTA-like 1 (.1.2) AT1G17750 122 / 6e-30 AtPEPR2 PEP1 receptor 2 (.1) AT5G48940 121 / 1e-29 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G17640 118 / 2e-29 Leucine-rich repeat (LRR) family protein (.1) AT3G49670 120 / 3e-29 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019356 [exp] 748 / 0 AT3G59510 377 / 1e-128 Leucine-rich repeat (LRR) family protein (.1) Lus10025578 [exp] 575 / 0 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10027040 [exp] 315 / 6e-107 AT3G59510 199 / 5e-62 Leucine-rich repeat (LRR) family protein (.1) Lus10028359 [exp] 174 / 3e-50 AT5G66330 423 / 5e-147 Leucine-rich repeat (LRR) family protein (.1) Lus10002822 [exp] 141 / 5e-38 AT2G15320 379 / 1e-130 Leucine-rich repeat (LRR) family protein (.1) Lus10029622 [exp] 137 / 2e-36 AT1G03440 534 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10028612 [exp] 129 / 3e-32 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10011585 [exp] 129 / 5e-32 AT5G65700 1044 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10030526 [exp] 128 / 9e-32 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G028400 [exp] 441 / 5e-153 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028600 [exp] 436 / 9e-152 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016800 [exp] 216 / 1e-65 AT5G66330 480 / 8e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.005G234400 [exp] 213 / 1e-64 AT5G66330 412 / 3e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117800 [exp] 212 / 3e-64 AT5G66330 506 / 2e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.009G097100 [exp] 189 / 7e-56 AT2G15320 473 / 2e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.001G301400 [exp] 186 / 7e-55 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028325 [exp] 134 / 2e-37 AT3G59510 129 / 7e-36 Leucine-rich repeat (LRR) family protein (.1) Potri.008G007600 [exp] 135 / 4e-34 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.004G001000 [exp] 127 / 2e-32 AT3G17640 386 / 1e-132 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10007417 pacid=23180221 polypeptide=Lus10007417 locus=Lus10007417.g ID=Lus10007417.BGIv1.0 annot-version=v1.0 ATGATGTCCAAAACATTCCACCTGTCTTCTCCTACTCATTTTCTTCTTCTACTACTTCTATCAACAATCGTGGCTCTACCTTTCATTCCACATCCAGTTC AGTCCATCACACATGTTCCCGACAGTGAAGCTCTCCGCGCTCTCAAGGAATCCATTGATCCTGTAACCATTACCGCCTCTTCATTTCTCTATAGCTGGGA TTTCTCTGTCGATCCATGTGACAGCTCTGGAGCCTTTCTTGGAGTGTTATGCTCATTCCCTCTCGACAACTCAACCAGCAGAGTCGTAGCCATTGGCCTC GATGCTGCCGGATATGATGGATTCCTTACCCCGGAAATCGGAAATTTGACCGACCTTGCTACACTTGATCTCACAAACAACAACTTTAGAGGTCCCATCC CGGAGACCATTGTCAACCTCAGACAGCTGACCAAATTCCTCATTTCTGAGAATCTATTCACAGGCCAAATACCAGAGGGAATCACCAAGCTGAAGAAACT TGAAGAGATTGACATATCGCATAACCACCTCTCCGGAGACCTCCCGGCCAAAATCACATCTTTGAGGAGTCTGAACCGGCTAATCATATCTGACAACGCC ATCACTGGTAGGCTTCCTGACCTTTCAGGACTATGGCAGCTTAGTGCATTAGATGTCAGTAACAATGAGCTGTATGGAAACATACCAAGGCTCCCACTTA CCCTGAAAACTTTGTCCATGAGCAACAACGTAATCTCTGGGCACATCTCCCCGGTGAAGCACCTTCAACGGCTTTTGGTAATGGACCTAAGCAACAACAG GCTATCAGGTCGAATAATCCACGAAGTTCTCACCTTGTCATCTTTGGTTCGCCTCAACATCTCCCACAACCATTTCACGGTGATGGAACCAATAGACTTT CCTGGAAGAGAGACTCATCTACAGGTGCTTGATGCAAACGATAACCAGTTACGTGGTCATTTGCCTCTCACATTGGCCGGCCTGGATAACCTTACATCTG CCGACCTATCACATAACTACTTCTCTGGCTCAATACCGTTTGAGTTTGGAGCCAAAGTAGGGCGCCCATGGAGATACCTCTTCTTGAATGACAACTTTCT CCAGGGAAGTCTGCCTCCACAGTTCACGGACGAAGCAAGGGAGATTAGAGGCAGCTTTGCTAATAACTGCTTGAGATGCGCACAAACCGTTCCACTCTGC CATGGAGGTCAGCGGCCGCACGTTGTTTGTGCCACTCAGAGAGAACGCCGGTGA
AA sequence Show only first row Show all	>Lus10007417 pacid=23180221 polypeptide=Lus10007417 locus=Lus10007417.g ID=Lus10007417.BGIv1.0 annot-version=v1.0 MMSKTFHLSSPTHFLLLLLLSTIVALPFIPHPVQSITHVPDSEALRALKESIDPVTITASSFLYSWDFSVDPCDSSGAFLGVLCSFPLDNSTSRVVAIGL DAAGYDGFLTPEIGNLTDLATLDLTNNNFRGPIPETIVNLRQLTKFLISENLFTGQIPEGITKLKKLEEIDISHNHLSGDLPAKITSLRSLNRLIISDNA ITGRLPDLSGLWQLSALDVSNNELYGNIPRLPLTLKTLSMSNNVISGHISPVKHLQRLLVMDLSNNRLSGRIIHEVLTLSSLVRLNISHNHFTVMEPIDF PGRETHLQVLDANDNQLRGHLPLTLAGLDNLTSADLSHNYFSGSIPFEFGAKVGRPWRYLFLNDNFLQGSLPPQFTDEAREIRGSFANNCLRCAQTVPLC HGGQRPHVVCATQRERR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59510			Leucine-rich repeat (LRR) fami...		Lus10007417 [exp]	0	1
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040526 [exp]	7.1	0.7495
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10033523 [exp]	7.7	0.7178
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10030185 [exp]	8.0	0.7313
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10014228 [exp]	13.9	0.7085
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041912 [exp]	15.2	0.7031
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	17.0	0.7023
					Lus10005297 [exp]	18.3	0.7023
					Lus10013260 [exp]	19.6	0.7023
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	20.8	0.7023
					Lus10035557 [exp]	21.9	0.7023

Compare expression of checked genes

Lus10007417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.