Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30890 275 / 2e-93 Integral membrane HRF1 family protein (.1.2) AT3G59500 268 / 7e-91 Integral membrane HRF1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027039 [exp] 296 / 9e-102 AT1G30890 469 / 2e-169 Integral membrane HRF1 family protein (.1.2) Lus10025577 [exp] 296 / 1e-101 AT1G30890 466 / 2e-168 Integral membrane HRF1 family protein (.1.2) Lus10008752 [exp] 219 / 2e-71 AT3G59500 392 / 4e-139 Integral membrane HRF1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G028425 [exp] 289 / 4e-99 AT1G30890 402 / 3e-143 Integral membrane HRF1 family protein (.1.2) Potri.017G028500 [exp] 289 / 4e-99 AT1G30890 402 / 3e-143 Integral membrane HRF1 family protein (.1.2) Potri.007G129900 [exp] 286 / 8e-98 AT1G30890 380 / 2e-134 Integral membrane HRF1 family protein (.1.2) Potri.014G175900 [exp] 213 / 2e-69 AT3G59500 378 / 5e-134 Integral membrane HRF1 family protein (.1) Potri.001G327700 [exp] 49 / 1e-07 AT1G30890 53 / 2e-09 Integral membrane HRF1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [flax] [poplar] Yip1 PF03878 [flax] [poplar] YIF1 YIF1
Representative CDS sequence Show only first row Show all	>Lus10007418 pacid=23180215 polypeptide=Lus10007418 locus=Lus10007418.g ID=Lus10007418.BGIv1.0 annot-version=v1.0 ATGGTGATTGTTTCTCTTCTCCATGTGCTTGCTTGTAGCATGTACACCAATGTTGGTGTCCAGCCTGGAGTTCCAATACCTCCAGCGAATGTTCAACCGA ACCCATTCGGTAATGCATTTTATGGAGCAGGCTCAGGACTGATAAGAGGTGGTCTGGGTGCTTACGGTGAGAAAATTTTAGGATCAAGCTCTGAGTATGT ACAAAGCAATATAACTAGATACTTCTCTGATCCCCAATATTATGTTCAAGTGAACGATCAGTATGTGATGAACAAAGTAAAACTTGTTCTATTCCCCTTG CACAGGGGACACTGGACACGAATAGCTGAGCCAGTTGGAGGTCGTTTGTCATATAAACTTCCTCTTTATGATATAAATGCGCCTGATTTGTACATTCCCT TCGTGGCTTTTGGTACCTATGTCATTCTTGCTGGCATGTCACTTGGACTCAATGGAAAGTTTAGGCCCGAAGCTCTCAATTGGCTATTCATCAAGGGATT GCTTGGTTGGTTCATGCAGGTTGCATTGCTTAAAATGGCTCTACTTTCTTTAGGCAGCGGAGAGGCTGCCTTGTTAGACATCGTGGCATATGCAGGATAT ATGTTCACAGGCCTGTGTCTCGCTGTTCTGGGGAAGATCTTACTAGGATACTTGTACTACATTTTGATGCCATGA
AA sequence Show only first row Show all	>Lus10007418 pacid=23180215 polypeptide=Lus10007418 locus=Lus10007418.g ID=Lus10007418.BGIv1.0 annot-version=v1.0 MVIVSLLHVLACSMYTNVGVQPGVPIPPANVQPNPFGNAFYGAGSGLIRGGLGAYGEKILGSSSEYVQSNITRYFSDPQYYVQVNDQYVMNKVKLVLFPL HRGHWTRIAEPVGGRLSYKLPLYDINAPDLYIPFVAFGTYVILAGMSLGLNGKFRPEALNWLFIKGLLGWFMQVALLKMALLSLGSGEAALLDIVAYAGY MFTGLCLAVLGKILLGYLYYILMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30890			Integral membrane HRF1 family ...		Lus10007418 [exp]	0	1
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10029734 [exp]	1.4	0.8050
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Lus10039112 [exp]	3.5	0.7089
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008204 [exp]	17.7	0.6783
AT1G46912			F-box associated ubiquitinatio...		Lus10003349 [exp]	106.2	0.6387
AT4G24840			unknown protein		Lus10024203 [exp]	203.8	0.6335

Compare expression of checked genes

Lus10007418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.