Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43410 588 / 0 FPA RNA binding (.1.2.3.4) AT4G12640 152 / 1e-37 RNA recognition motif (RRM)-containing protein (.1) AT2G42890 81 / 2e-15 AML2, MEI2 MEI2-like 2 (.1.2.3) AT5G07290 77 / 3e-14 AML4 MEI2-like 4 (.1) AT4G34110 70 / 5e-12 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT5G61960 69 / 1e-11 AML1 MEI2-like protein 1 (.1.2) AT1G71770 68 / 2e-11 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G54080 64 / 3e-10 UBP1A oligouridylate-binding protein 1A (.1.2) AT2G23350 64 / 5e-10 PABP4, PAB4 poly(A) binding protein 4 (.1) AT2G36660 61 / 3e-09 PAB7 poly(A) binding protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019359 [exp] 1525 / 0 AT2G43410 624 / 0.0 RNA binding (.1.2.3.4) Lus10025188 [exp] 140 / 5e-34 AT4G12640 567 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10016070 [exp] 140 / 7e-34 AT4G12640 554 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10010370 [exp] 76 / 7e-14 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 75 / 1e-13 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10011924 [exp] 65 / 1e-10 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10002222 [exp] 63 / 2e-10 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 62 / 6e-10 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10027641 [exp] 63 / 7e-10 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G026600 [exp] 872 / 0 AT2G43410 659 / 0.0 RNA binding (.1.2.3.4) Potri.007G131100 [exp] 787 / 0 AT2G43410 633 / 0.0 RNA binding (.1.2.3.4) Potri.014G171900 [exp] 256 / 7e-72 AT4G12640 698 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Potri.014G025400 [exp] 68 / 2e-11 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G124200 [exp] 66 / 6e-11 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.004G143400 [exp] 64 / 2e-10 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.006G279600 [exp] 64 / 2e-10 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.016G090700 [exp] 63 / 2e-10 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G105300 [exp] 63 / 5e-10 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.008G172100 [exp] 62 / 5e-10 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0616 [flax] [poplar] SPOC PF07744 [flax] [poplar] SPOC SPOC domain
Representative CDS sequence Show only first row Show all	>Lus10007419 pacid=23180227 polypeptide=Lus10007419 locus=Lus10007419.g ID=Lus10007419.BGIv1.0 annot-version=v1.0 ATGAAGCAAGGTAGGCAATTGCAGCAGCAGAGGGACTCGGAGGATGGAGCTACAACTCCATCGAACAATCTCTGGGTAGGGAATTTGGCGCAAGGTATTA TAGACTCGGATCTGATGGGACTCTTCGCTAAATACGGCGCGCTCGACAGCGTGACGGCTTATTCCACGCGGAGCTACGCGTTTGTGTTCTTCAAGCGCGT GGAGGACGCCACGGCCGCCAAGTATGCTCTGCAAGGCGCCGTGCTCCGTGGTATGGCGTTGAAGATCGAGTTTGCCAGACCGGCCAAGCCTAGCAAGTCC TTATGGGTCGGTGGAATCAGCCCCTCCGTATCCAAACAACAGTTGGAGGAAGAGTTACAGAGCTTTGGTAAAATCGAAGAATTTAAGTTTGTTAGAGACC GCAACACCGTTTACGTTGAATATTTAAGGTTGGAAGATGCTATTGAGGCTATGAAAAGCATGAACGGGAAGCGAATTGGTGGTGAGCAGATACGTGTTGA TTTCCTTCGGTCTCACCCTTCAAGAAGAGAACACATGTATGACCATCGTGATTCAAGAGAGAATCAGTTCTCCTCTGGACTTAAACGACCTCAGCAATCC ATGTCCTCTGGTGGGCGAAAAGAAGGTCCACCTAGTAATGTTTTGTGGGTAGGTTATCCCCCTTCCCTGCAGATTGATGAACAAATGCTCCACAATGCAA TGATTCTTTTTGGCGAGATTGAGAGAATTAAGAGTTTTCCTTCAAGGAACTATTCATTTGTGGAATTTCGGAGTGTTGATGAAGCTCGTAGGGCCAAAGA AAGACTGCAGGGACGTCTATTTAATGATCCTCAGATAACAATCATGTTTTCAAGCAGTGGGTCAGCACCTGGTAAAGAGTATTCTAATCATTACCCAGGA ATGAAAGGACGGTCAGATGCTGTTAATGACGAGGGTGCATTTGGAACTGGGCAATTGGAGATGCTTGAGCATCATCAGTCAATAGGTAGAGGTATCCTAC CTGGAAGCCTCCACAATTCACATCTTCAGTTGCAGCATTTTGGTCCTGAAGGTGGTTTGGATAATTTAAATGATTTAACTTCACGTCACACATCGCGAGA CAGTGGTCAGCTGGGGCCAACTTGGAGAAGGCCATCTCCTCCCACTGCTGGCATCCTTCCTTCACCTGGTTCTAGGATTAGGCAATCGATGAAGTCTGGC TCTAGTGGATGGGATGTGCTTAATTCAAGTCATTTTCAAAGGGAGCCCAAGCGATCGAGGATTGGGACTCCAGATGATGATTCTTTTCCACTGAGAAGTG TTGATGATCGTAGCTTAGGATTAAGAACACATGGACTTGGTCCTTTAAATGATAAAGTTAATCGGTTTGCAAATAGTGGAAGGGATCCTGTTGAGACAGA TTACATATGGCGTGGAATGATTGCCAAGGGTGGAACACCAGTTTGTCATGCTCGTTGTGTCCCAATTGGAGACCTTATGGAAGCAGAATTTCCTAAAGTG GTCAATTGTTCAGCCAGAACAGGATTAGATATGCTCGCAAAACACTATGCCGAAGCCATTGGATTTGACATTGTATTCTTTTTGCCAGACAGTGAACATG ATTTTGCTTCATACACTGAGTTCCTTCGCTACTTGAGTTCCAAAAACCGTGCTGGCGTTGTGAAGTTTGAGGATGGCACCACACTTTTCTTGGTCCCACC ATCGGATTTCTTGACAAATGTCTTGAAAGTTGCTGGACCTGAACGTCTGTATGGAGTGGTTCTTAAGTTGCTACAACAACTGCCGCCCAGCAACTTACAA GTGCAGCAACAGTTGCATCATCTAACTCAAGATTTTGCCAGGGATCAGTTTGCTCACGAAGCTCGCTATAATCCCGTGGTTCGGAAGAATGAGCAATTAG ATTATAATGATGTTATGCATGATGAGTCAAAGCTTCCTTCAAGATCATTTTATCCACCAATTGCTGAATCTCCCTCTGCAGCAACAGTGTCACGAGACTA TCCTAGTAGCAGTCGTAAAGTGTCGGTATCATCAGGGTTGTCCTTGACACCAGAGCTAATTGCCTCACTTAGTTCCTTGCTACCTGCAAAAGCACAAGTG ACTGGGTCTGAGAGTGGTCAGCCAGCACCAGGGGTATCTACTGTTAGGCATTTTTCTGATAGAGCAACTCCACCACAAGGATGGAGACCTGACTATCTTG CAGTAAACAACTCAAATAATCTACAATCAGGGAATCAATCCAATTCTCAGTCACAGTTTCAGCAATATCCTTTGGCTTCTAGTACATCTAACCATCCTGG AAGCTCAGTCGCCAGTAGCATACCGGTTCAGGAATTCAATGCCAATTTATCGCATCAGATGCCATTGAACAATTTCCCTGTGGCTTCTCAAAGTGGGCAA ATGGTTTTCCCTGCCCAGTCCGTCAGTTGGACAACAACCTCAAAATCCAGTGCACTGCCTGCTCATGTTCCAGTTGCAAACTATTTACCAACACAAGCAC AATCAGGTGATAGAGTTGGCATGGATGTCCAAAACCAGTCGCAAACCCCTCACTCTGGAGCTGTTCAGGGCACATCAGAGACGGAAGTTGACAAAAATCA ACGGTACCAGTCAACATTACAGTTTGCTGCTAACCTTCTTCTCCAGATACAACAGCAGCAGCAAACAAATACGTCAGGGGCTACAGGTGGATCGGGAAAC CAGCAATGA
AA sequence Show only first row Show all	>Lus10007419 pacid=23180227 polypeptide=Lus10007419 locus=Lus10007419.g ID=Lus10007419.BGIv1.0 annot-version=v1.0 MKQGRQLQQQRDSEDGATTPSNNLWVGNLAQGIIDSDLMGLFAKYGALDSVTAYSTRSYAFVFFKRVEDATAAKYALQGAVLRGMALKIEFARPAKPSKS LWVGGISPSVSKQQLEEELQSFGKIEEFKFVRDRNTVYVEYLRLEDAIEAMKSMNGKRIGGEQIRVDFLRSHPSRREHMYDHRDSRENQFSSGLKRPQQS MSSGGRKEGPPSNVLWVGYPPSLQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARRAKERLQGRLFNDPQITIMFSSSGSAPGKEYSNHYPG MKGRSDAVNDEGAFGTGQLEMLEHHQSIGRGILPGSLHNSHLQLQHFGPEGGLDNLNDLTSRHTSRDSGQLGPTWRRPSPPTAGILPSPGSRIRQSMKSG SSGWDVLNSSHFQREPKRSRIGTPDDDSFPLRSVDDRSLGLRTHGLGPLNDKVNRFANSGRDPVETDYIWRGMIAKGGTPVCHARCVPIGDLMEAEFPKV VNCSARTGLDMLAKHYAEAIGFDIVFFLPDSEHDFASYTEFLRYLSSKNRAGVVKFEDGTTLFLVPPSDFLTNVLKVAGPERLYGVVLKLLQQLPPSNLQ VQQQLHHLTQDFARDQFAHEARYNPVVRKNEQLDYNDVMHDESKLPSRSFYPPIAESPSAATVSRDYPSSSRKVSVSSGLSLTPELIASLSSLLPAKAQV TGSESGQPAPGVSTVRHFSDRATPPQGWRPDYLAVNNSNNLQSGNQSNSQSQFQQYPLASSTSNHPGSSVASSIPVQEFNANLSHQMPLNNFPVASQSGQ MVFPAQSVSWTTTSKSSALPAHVPVANYLPTQAQSGDRVGMDVQNQSQTPHSGAVQGTSETEVDKNQRYQSTLQFAANLLLQIQQQQQTNTSGATGGSGN QQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43410		FPA	RNA binding (.1.2.3.4)		Lus10007419 [exp]	0	1
AT5G40520			unknown protein		Lus10027029 [exp]	39.1	0.8216
AT3G16010			Pentatricopeptide repeat (PPR-...		Lus10011464 [exp]	51.6	0.8163
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10028074 [exp]	75.8	0.7873
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10038861 [exp]	78.6	0.8078
AT1G54385			ARM repeat superfamily protein...		Lus10020266 [exp]	81.0	0.8072
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10006064 [exp]	83.5	0.7949
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016726 [exp]	97.4	0.7929
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10040776 [exp]	102.4	0.7717
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004003 [exp]	103.5	0.7371
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	115.3	0.7829

Compare expression of checked genes

Lus10007419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.