Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20320 480 / 2e-170 ABCI15, TGD2 ATP-binding cassette I15, trigalactosyldiacylglycerol2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019360 [exp] 619 / 0 AT3G20320 525 / 0.0 ATP-binding cassette I15, trigalactosyldiacylglycerol2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G026100 [exp] 518 / 0 AT3G20320 481 / 1e-170 ATP-binding cassette I15, trigalactosyldiacylglycerol2 (.1.2) Potri.007G131700 [exp] 513 / 0 AT3G20320 511 / 0.0 ATP-binding cassette I15, trigalactosyldiacylglycerol2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02470 [flax] [poplar] MlaD MlaD protein
Representative CDS sequence Show only first row Show all	>Lus10007420 pacid=23180222 polypeptide=Lus10007420 locus=Lus10007420.g ID=Lus10007420.BGIv1.0 annot-version=v1.0 ATGTTGTCCTCGTCCATGGTGGTTGTCCCTCATTGTTCCACCAACAATTTGTCTTATCTACCCCTGAAGCCTCAAAGGAGGATGCCACTGATTCATGCTA TGAGTTCAGACACAGAACACAGCCAGCCTCTACAATCCTCAAGTACAAGGAATCCATTGTCACTTGTTTTGGAGGTTCCCCAAACCCTTTGGAGACAAAC GCTAAAACCACTAAGTGATTTTGGGCTTGGCAGGAGAAGCATTTGGGAAGGTGGGGTGGGCTTGTTTCTCGTATCAGGTGCAGTGCTCCTTGCACTCAGT TTGGCTTGGTTGAGAGGGTTTCAACTGCGCTCTAAATTCAGAAAGTACCATGCTGTATTAGAGTTTGCTCAGGCTTGTGGTATTTGTACCGGGACACCCG TTAGGATTAGAGGGGTGACTGTTGGCAATGTCATCCGTGTGAACCCTTCCTTGAGAAGTATTGAAGCAGTAGTGGAGGTTGAAGATGATAAGATAATCAT ACCAAGAAATTCACTGGTTGAGGTCAATCAATCTGGTCTTCTAATGGAAACTATGATTGATATTACCCCACGTGACCCAATTCCAACACCCTCTGTAGGA CCTCTAGATTTGGACTGCCTCAAAGAAGGTCTTATTGTATGTGATAGGGAAAGGTTGAAGGGCTATCAAGGTGTAAGTTTGGATGCACTGGTAGGCATAT TCACCCGTCTTGGACGTGAGATGGAGGAAATTGGTGTTGCCAATACCTATTCACTAGCTGAGCGTGTCGCTGCTGTTATTGAAGATGCACAGCCGCTACT TACTATGATATCTCAGATCAAAGCCATGGCAGAAGATGTCAAGCCTTTGTTGGCTGAAGTCCGTGAAAGAGGTCTCGTGAAGGAAGTTGAAGCTTTAACA AAAAGCCTCACTCAAGCCTCTGAAGATTTAAGAAAAGCACACACCTCCGTTTTGACGCCTGAGAACACGGAGTTAATTCAACGATCAATTTATAGCCTCA TTTTCACATTGAAGAATGTCGAGAATATAAGCTCCGACATTCTGGGATTCACTGGCGATGAGGTGACAAGGCGAAATTTGAAAGCACTTATAAAGTCCCT TAGCAGATTGCTGTGA
AA sequence Show only first row Show all	>Lus10007420 pacid=23180222 polypeptide=Lus10007420 locus=Lus10007420.g ID=Lus10007420.BGIv1.0 annot-version=v1.0 MLSSSMVVVPHCSTNNLSYLPLKPQRRMPLIHAMSSDTEHSQPLQSSSTRNPLSLVLEVPQTLWRQTLKPLSDFGLGRRSIWEGGVGLFLVSGAVLLALS LAWLRGFQLRSKFRKYHAVLEFAQACGICTGTPVRIRGVTVGNVIRVNPSLRSIEAVVEVEDDKIIIPRNSLVEVNQSGLLMETMIDITPRDPIPTPSVG PLDLDCLKEGLIVCDRERLKGYQGVSLDALVGIFTRLGREMEEIGVANTYSLAERVAAVIEDAQPLLTMISQIKAMAEDVKPLLAEVRERGLVKEVEALT KSLTQASEDLRKAHTSVLTPENTELIQRSIYSLIFTLKNVENISSDILGFTGDEVTRRNLKALIKSLSRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10007420 [exp]	0	1
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10030539 [exp]	3.2	0.7902
AT5G20520		WAV2	WAVY GROWTH 2, alpha/beta-Hydr...		Lus10011949 [exp]	5.5	0.7796
AT1G28530			unknown protein		Lus10015294 [exp]	8.5	0.8032
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10004053 [exp]	8.7	0.8145
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10018844 [exp]	10.2	0.7946
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10007989 [exp]	11.7	0.8082
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Lus10035067 [exp]	13.0	0.7832
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031336 [exp]	20.4	0.8032
AT1G29370			Kinase-related protein of unkn...		Lus10020762 [exp]	23.7	0.7787
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009050 [exp]	25.0	0.8035

Compare expression of checked genes

Lus10007420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.