Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 528 / 0 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 520 / 0 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22360 509 / 2e-178 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 508 / 9e-178 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22370 488 / 6e-170 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 473 / 5e-164 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G46670 241 / 3e-74 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT2G36970 240 / 2e-73 UDP-Glycosyltransferase superfamily protein (.1) AT3G11340 238 / 6e-73 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G46660 227 / 9e-69 UGT76E12 UDP-glucosyl transferase 76E12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019364 [exp] 1008 / 0 AT1G22400 523 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10010665 [exp] 711 / 0 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10017542 [exp] 688 / 0 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10031388 [exp] 543 / 0 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10041055 [exp] 525 / 0 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10024583 [exp] 517 / 0 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013652 [exp] 512 / 0 AT1G22360 359 / 3e-121 UDP-glucosyl transferase 85A2 (.1.2) Lus10032220 [exp] 511 / 5e-179 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 510 / 7e-179 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G021000 [exp] 602 / 0 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023151 [exp] 602 / 0 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G022300 [exp] 594 / 0 AT1G22360 518 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023101 [exp] 592 / 0 AT1G22360 516 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022500 [exp] 590 / 0 AT1G22400 514 / 3e-180 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G022600 [exp] 589 / 0 AT1G22400 515 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021100 [exp] 585 / 0 AT1G22360 505 / 5e-177 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G022000 [exp] 585 / 0 AT1G22360 499 / 1e-174 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021500 [exp] 585 / 0 AT1G22360 501 / 3e-175 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G022400 [exp] 582 / 0 AT1G22360 495 / 4e-173 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10007421 pacid=23180220 polypeptide=Lus10007421 locus=Lus10007421.g ID=Lus10007421.BGIv1.0 annot-version=v1.0 ATGGGTTCGGAAGAGGGAGCTGGAGTTGTCTTCCCGAAGCCACATGCTCTGTGCATATCATTCCCAAGCCAGAGCCACATCAAGGCCACCTTGAAATTCG CCAAGCTACTCCACAACAGAGGATTCCATATCACTTTTGTCAACAACGAGTACAACCACAACCGCTTCCTTAGAACCAAAGGACCTCATGCTCTCGACGG CCTCCCTGACTTCCGATTCACTTCCATTCCTGATGGTCTCCCTCCATCCGACAATCCTGACTCCACTCAGGACGTCCCTGCTATATGCAACTCCATCCGC AATTTCATGATTTCTCCTTTCAGGGACCTCGTTGCCAAGCTCAACGATCCCCAACACTCCAATGGTGCTCCTCCTGTCACCTGCATCGTCACTGACACCA TGGCTTTTGCTGTCGATGTTGCTCGTGAGTTTGGTATCCCTTCTGTCGCCTATTGGAGCTTTGCTGCTTGTGGCTTCATGGGGTTTAAGCAGTTCAAACC TCTCTTGGACCAAGGAATCACTCCCTTCAAGGATGACAGCTATCTGACAAATGGATATTTGGAGACACCCTTTGAAGTTCCAGGGATGAAGGACATCCGT CTGAGAGATCTACCGAGCTTCTTCCGCACAACCGACCCTGACGACCAAGTTTTCTACTGCCTAATGGAAGTAGCTGAAGCAGCACATAGAGCTTCCGCTG TGTTACTTCACACCTTCGACGCCCTTGAACCAAACGTTCTAACCGCCCTCAACGAAATCTACCCGAATCGAGTCTATCCCGTGGCACCTATGCAGCTCAT CCTGAACCAAATCAAAAGTACACAACAAGAGTCTAGCCTCGACACCATCAGCTACAGCTTGTGGAAGGAAGAGCCAGAGTGCCTTCGCTGGCTGGACACG AAACCTCCGAATTCGGTGATCTACGTGAATTTCGGAAGCATCACCACCATGTCCAAACAGCACCTGATAGAATTCGGGATGGGATTCGCCAACAGCGACG TCTCATTCCTCTGGGTGATCCGACCCGACCTGGTGACAGGAGAATCGGCAGCTTTCCCTCCCGAATTCAAGGAGAAGGCAGATAAAACTGGGTTTATATC CGGGTGGTGCCCGCAGGAGGATGTGCTCAACCATCCTGCAGTAGGAGGGTTTCTAACCCATTGCGGATGGGGTTCCATCATTGAGAGCTTGACAGCTGGA GTTCCGTTGCTGTGTTGGCCCTTCTTTGGAGACCAGCCCATTAACTGTAGGACTGCGTGTACCGAGTGGGGGATTGGAATGGAGATCGACAAGGATGTCA AGAGAAATGATGTTGAGGAGCTGGTGAGGGAGTTGATGAATGGGGACAAGGGCAAGAAAATGAGGAGCAAAGCTCAGGATTGGGCCAAACTGGCTCGAGA AGCAACGAGCCCTGGTGGGTCCTCCGTCCTTAATCTGGATCGTTTGGTTTCTCAAGTTCTTTCACCCAACTCCAAGTAG
AA sequence Show only first row Show all	>Lus10007421 pacid=23180220 polypeptide=Lus10007421 locus=Lus10007421.g ID=Lus10007421.BGIv1.0 annot-version=v1.0 MGSEEGAGVVFPKPHALCISFPSQSHIKATLKFAKLLHNRGFHITFVNNEYNHNRFLRTKGPHALDGLPDFRFTSIPDGLPPSDNPDSTQDVPAICNSIR NFMISPFRDLVAKLNDPQHSNGAPPVTCIVTDTMAFAVDVAREFGIPSVAYWSFAACGFMGFKQFKPLLDQGITPFKDDSYLTNGYLETPFEVPGMKDIR LRDLPSFFRTTDPDDQVFYCLMEVAEAAHRASAVLLHTFDALEPNVLTALNEIYPNRVYPVAPMQLILNQIKSTQQESSLDTISYSLWKEEPECLRWLDT KPPNSVIYVNFGSITTMSKQHLIEFGMGFANSDVSFLWVIRPDLVTGESAAFPPEFKEKADKTGFISGWCPQEDVLNHPAVGGFLTHCGWGSIIESLTAG VPLLCWPFFGDQPINCRTACTEWGIGMEIDKDVKRNDVEELVRELMNGDKGKKMRSKAQDWAKLAREATSPGGSSVLNLDRLVSQVLSPNSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10007421 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10019364 [exp]	1.0	0.9537
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10011499 [exp]	6.3	0.8369
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006012 [exp]	6.5	0.8374
AT1G55790			Domain of unknown function (DU...		Lus10002759 [exp]	6.8	0.8759
AT1G55790			Domain of unknown function (DU...		Lus10000235 [exp]	6.9	0.8719
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10007754 [exp]	10.2	0.8293
AT5G49690			UDP-Glycosyltransferase superf...		Lus10008955 [exp]	15.5	0.8388
AT1G71040		LPR2	Low Phosphate Root2, Cupredoxi...		Lus10032443 [exp]	16.2	0.8532
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10000632 [exp]	16.3	0.8273
					Lus10023424 [exp]	16.9	0.8147

Compare expression of checked genes

Lus10007421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.