Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31810 568 / 0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G60510 417 / 1e-144 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT2G30660 331 / 2e-111 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G65940 331 / 3e-111 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30650 320 / 8e-107 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G06550 281 / 2e-91 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G13360 176 / 1e-50 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G24360 172 / 4e-49 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT4G16800 67 / 2e-12 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G43280 62 / 1e-10 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010685 [exp] 829 / 0 AT4G31810 575 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10028182 [exp] 431 / 8e-151 AT3G60510 453 / 6e-160 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10042883 [exp] 390 / 2e-135 AT4G31810 394 / 4e-137 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10038717 [exp] 324 / 2e-106 AT5G65940 565 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Lus10020758 [exp] 273 / 2e-88 AT1G06550 602 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007334 [exp] 269 / 7e-87 AT1G06550 595 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10019396 [exp] 187 / 1e-54 AT4G13360 607 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10043253 [exp] 163 / 3e-45 AT4G13360 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10010994 [exp] 81 / 1e-16 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G018800 [exp] 589 / 0 AT4G31810 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.014G057400 [exp] 473 / 3e-166 AT3G60510 520 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.001G156900 [exp] 444 / 4e-155 AT3G60510 432 / 9e-151 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.014G179000 [exp] 326 / 5e-109 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.010G170200 [exp] 305 / 3e-100 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004150 [exp] 301 / 3e-99 AT5G65940 428 / 6e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004200 [exp] 301 / 3e-99 AT5G65940 430 / 2e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.006G277300 [exp] 301 / 3e-99 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004100 [exp] 299 / 2e-98 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.002G057700 [exp] 267 / 6e-86 AT1G06550 592 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10007422 pacid=23180212 polypeptide=Lus10007422 locus=Lus10007422.g ID=Lus10007422.BGIv1.0 annot-version=v1.0 ATGCAGAGGCTGAAAGGTGGAGTGACGAGAACATTGAGACAATACAGCTTGAATTCCAGAAATGGAGACCACCACAGCAGAAGCTTCGCAGCTCTCCCTA ACTACGCCGCCGTAAACGATTCTGATTTTCAAGATCAGGTTTTGGTAGAAGGAAGAGCAAAATCTAGAGCTGCCATTCTCAATAGACCCGATTCCCTCAA TGCTTTTACGCCTCCCATGGTCGCCCGGCTTAAGAGATTGTACGAGTCGTGGGAAGAAAACCCGAGTATTGGATTTGTATTGATGAAGGGTGGCGGCAAG AAGGCCTTTTGTTCTGGTGCTGATGTTGTTTCCCTCTGTGAGATGGTTGATGATGGCAAAGTTGAAGAGTGCAAAAGATATTTTGAGACTTTGTACAAGT ATGTCTACCTACAAGCAACATATCTTAAGCCGCATGTGGCTATTTTGAATGGAGTCACTATGGGATGTGGAGCTGGAATTTCAGTTCCAGGAATGTTTCG CTTGGTCACTGACAAAACTATTTTTGCACATCCAGAGGCTCAGATAGGTTTTCATCCTGATGCAGGAGCTTCATTCTATCTCTCCCGCCTGCCTGGTTAC TTAGGGGAATACTTAGCCCTGACTGGAGATAAGCTTAATGGAATTGAAATGCTTGCTTGTGGCCTAGCAACTCATTACTCATTGCAGTCGAGACTTCCTT GGATTGAGGACAGACTTGGTAATTTAGTCACTGATGACCGTGATACCATTGAGATGTCTCTCGCACATTATGGCATTGTTGACCATCCTGATAAGAATAG CGTTCTTCACAAGATGGAGCTGATTGATAATTGTTTCAACCATGAGACATTAGAAGAAATAATCGATGCACTGGAGAAAGAATCTATGAGCTCCTACAGT CAATGGTCTAAGATAACTCTTAACAAACTAAAAGAAGCCTCCCCACTAAGCTTGAAGGTTACATTACAATCTATACGTGAAGGTAGATTCCAGTCTCTTG ATCAATGCCTCTCTCGTGAGTATCGAATGTCGCTAGCAGGGATCTCGAAAAGAGTTTCCAATGACTTGTTTGAGGGTGTTCGTGCTCGGTTAGTGGACAA GGACTTTACTCCGAAGTGGGATCCTCCAAGGTTAGGTGATGTGAGTAAAGAGATGGTGGATAGCTACTTCTCACGGCTGGACGAATTCGAGCCTGAGCTC GAGCTCCCGACAGCAACCCGGGAGCCATTCATATAA
AA sequence Show only first row Show all	>Lus10007422 pacid=23180212 polypeptide=Lus10007422 locus=Lus10007422.g ID=Lus10007422.BGIv1.0 annot-version=v1.0 MQRLKGGVTRTLRQYSLNSRNGDHHSRSFAALPNYAAVNDSDFQDQVLVEGRAKSRAAILNRPDSLNAFTPPMVARLKRLYESWEENPSIGFVLMKGGGK KAFCSGADVVSLCEMVDDGKVEECKRYFETLYKYVYLQATYLKPHVAILNGVTMGCGAGISVPGMFRLVTDKTIFAHPEAQIGFHPDAGASFYLSRLPGY LGEYLALTGDKLNGIEMLACGLATHYSLQSRLPWIEDRLGNLVTDDRDTIEMSLAHYGIVDHPDKNSVLHKMELIDNCFNHETLEEIIDALEKESMSSYS QWSKITLNKLKEASPLSLKVTLQSIREGRFQSLDQCLSREYRMSLAGISKRVSNDLFEGVRARLVDKDFTPKWDPPRLGDVSKEMVDSYFSRLDEFEPEL ELPTATREPFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10007422 [exp]	0	1
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	13.6	0.6743
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013303 [exp]	29.3	0.5552
AT2G18850			SET domain-containing protein ...		Lus10025463 [exp]	50.2	0.5686
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10022801 [exp]	61.8	0.5583
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10005890 [exp]	63.3	0.5698
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10040813 [exp]	81.4	0.5537
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10018508 [exp]	82.6	0.5100

Compare expression of checked genes

Lus10007422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.