Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38640 186 / 6e-60 Protein of unknown function (DUF567) (.1) AT5G41590 142 / 2e-42 Protein of unknown function (DUF567) (.1) AT3G15810 115 / 5e-32 Protein of unknown function (DUF567) (.1) AT1G80120 99 / 1e-25 Protein of unknown function (DUF567) (.1) AT3G14260 87 / 5e-21 Protein of unknown function (DUF567) (.1) AT1G53870 87 / 6e-21 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G53890 87 / 6e-21 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2), Protein of unknown function (DUF567) (.3) AT1G53880 87 / 1e-19 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53900 87 / 1e-19 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT3G11740 70 / 8e-15 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010681 [exp] 405 / 5e-146 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1) Lus10017526 [exp] 160 / 9e-49 AT5G41590 194 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10028756 [exp] 154 / 1e-46 AT5G41590 194 / 7e-62 Protein of unknown function (DUF567) (.1) Lus10016666 [exp] 100 / 1e-25 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 95 / 9e-24 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 91 / 2e-22 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10008485 [exp] 76 / 6e-17 AT3G14260 132 / 4e-38 Protein of unknown function (DUF567) (.1) Lus10007118 [exp] 64 / 8e-13 AT3G15810 191 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10001484 [exp] 65 / 9e-13 AT3G14260 137 / 5e-40 Protein of unknown function (DUF567) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G143000 [exp] 229 / 2e-76 AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 225 / 5e-75 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.001G098400 [exp] 156 / 1e-47 AT5G41590 201 / 3e-65 Protein of unknown function (DUF567) (.1) Potri.003G133200 [exp] 148 / 9e-45 AT5G41590 207 / 1e-67 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 121 / 3e-34 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.001G192000 [exp] 120 / 8e-34 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.006G067000 [exp] 96 / 2e-24 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 96 / 3e-24 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 94 / 3e-23 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1) Potri.003G072200 [exp] 83 / 1e-19 AT3G14260 173 / 2e-54 Protein of unknown function (DUF567) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10007423 pacid=23180223 polypeptide=Lus10007423 locus=Lus10007423.g ID=Lus10007423.BGIv1.0 annot-version=v1.0 ATGACAAAGGTGTACCCAAACTTGGCTTCTTCTTGTAGGAGCAGTGGCCGCGATGAGTTCGACGATCCACGTAAGCAGCCCACCGCCGGAGAGGCAAACG ACGCCGTGCAGCTAACCGTATGGAAAAAATCCCTACTCTTCAACTGCAACGGTTTCACGGTGTTCGACGCCAAGGGAAACTTAGTTTTCAGAGTCGACAA CTACATGGCAGCTGCTTCCGGCGAGATCCTGCTCATGGACGCCGCCGGGAACGCTCTGCTGACCATCCGCCGCAAAAAGAAGATGGGTCTGGCGGACAGC TGGACGGTATACGAGGGAGAAACGACGGCGAATCCCATGTTTTGTGTACGGAAGAAGGTGATGAGTCCGGGATGTTTGGCGCAGGTGTTGAGCGGTAGTG GTAGTGGGAGCTTGCGGTATGAGATAGAGGGTTCGTTTGCTCAGAGGAGATGTGTGGTTTATGACAAGAGGCGGAGGAGCGTGGTTGAGATTTTACAGAA GGAGGCGGCTGTCGGAGGGGTGACGTTTGGGTTTGATGTGTTTCGTATGGTGGTTCGTAGTGGGTTGATCCAAACGTCAGTAGCGATGGCGCTTGTCATC CTTCTTGACCAGATGTATGCATCTCCCACACGCTGA
AA sequence Show only first row Show all	>Lus10007423 pacid=23180223 polypeptide=Lus10007423 locus=Lus10007423.g ID=Lus10007423.BGIv1.0 annot-version=v1.0 MTKVYPNLASSCRSSGRDEFDDPRKQPTAGEANDAVQLTVWKKSLLFNCNGFTVFDAKGNLVFRVDNYMAAASGEILLMDAAGNALLTIRRKKKMGLADS WTVYEGETTANPMFCVRKKVMSPGCLAQVLSGSGSGSLRYEIEGSFAQRRCVVYDKRRRSVVEILQKEAAVGGVTFGFDVFRMVVRSGLIQTSVAMALVI LLDQMYASPTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38640			Protein of unknown function (D...		Lus10007423 [exp]	0	1
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008189 [exp]	5.9	0.9387
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10008417 [exp]	9.9	0.9056
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10037455 [exp]	10.2	0.9226
AT4G15490		UGT84A3	UDP-Glycosyltransferase superf...		Lus10019809 [exp]	10.5	0.9047
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	11.5	0.9206
AT3G61920			unknown protein		Lus10003193 [exp]	14.3	0.9036
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10009037 [exp]	20.6	0.9212
AT5G53850			haloacid dehalogenase-like hyd...		Lus10009198 [exp]	21.0	0.9223
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031196 [exp]	21.4	0.8968
AT3G14880			unknown protein		Lus10042453 [exp]	23.6	0.9220

Compare expression of checked genes

Lus10007423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.