Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35640 295 / 3e-98 ATSERAT3;2 serine acetyltransferase 3;2 (.1) AT2G17640 262 / 5e-86 SAT-106, AtSerat3;1 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1) AT1G55920 176 / 1e-52 SAT5, SAT1, AtSerat2;1 SERINE ACETYLTRANSFERASE 5, SERINE ACETYLTRANSFERASE 1, serine acetyltransferase 2;1 (.1) AT5G56760 171 / 9e-51 SAT-52, AtSerat1;1, SAT5 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) AT3G13110 171 / 1e-49 SAT-M, SAT-A, SAT3, SAT-1, AtSerat2;2 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) AT5G66510 44 / 0.0001 CA3, GAMMACA3 ,GAMMA CA3 gamma carbonic anhydrase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010679 [exp] 464 / 4e-165 AT4G35640 448 / 6e-159 serine acetyltransferase 3;2 (.1) Lus10008567 [exp] 181 / 1e-54 AT5G56760 482 / 2e-173 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Lus10032686 [exp] 177 / 4e-53 AT5G56760 481 / 2e-173 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Lus10016603 [exp] 165 / 4e-48 AT3G13110 430 / 2e-151 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Lus10040503 [exp] 160 / 2e-46 AT3G13110 434 / 4e-153 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G109500 [exp] 183 / 2e-55 AT5G56760 419 / 1e-148 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Potri.015G147000 [exp] 180 / 2e-54 AT5G56760 420 / 5e-149 SERINE ACETYLTRANSFERASE 52, serine acetyltransferase 1;1 (.1) Potri.001G365500 [exp] 169 / 7e-50 AT3G13110 402 / 3e-140 SERINE ACETYLTRANSFERASE 3, SERINE ACETYLTRANSFERASE-MITOCHONDRIAL, SERINE ACETYLTRANSFERASE A, SERINE ACETYLTRANSFERASE-1, serine acetyltransferase 2;2 (.1) Potri.005G099700 [exp] 125 / 3e-34 AT4G35640 280 / 2e-94 serine acetyltransferase 3;2 (.1) Potri.011G068001 [exp] 63 / 7e-12 AT2G17640 134 / 6e-39 SERINE ACETYLTRANSFERASE 106, Trimeric LpxA-like enzymes superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06426 [flax] [poplar] SATase_N Serine acetyltransferase, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10007424 pacid=23180226 polypeptide=Lus10007424 locus=Lus10007424.g ID=Lus10007424.BGIv1.0 annot-version=v1.0 ATGCCCATAACTTCCGATCGTAACCATACCATATTCAACAACAAACCATACCACATTCTGTCTCTCAACTCAATGGCCCAAGATACCACACTGTGCCTTT CCATGACCGGCAAACAACAACAACAACAGCATAACAAGAGCTCCTATCCTTTCGAGAAGATTTTCCCAGTTTACGCCATGGGAGTCTCCACCCCACACTC TGACTCTATTATTGTAAACTCAGTTGACCACGACCACATTTGGGAGGCCGTACAGGACGAGGCCAAGTCCGAGGCAGAGAAGGAACCAATTCTAAGCAGC TTTCTGTACGCAAGTATACTCTCACATGACTGCTTGGAGCAAGCACTTTCCTTTGTTCTCTCCAATCGACTCCACAATCCCACCCTTTTGCAGAGGCGGT TGCCACTCTCTGCAAAGCTACAGAGTAGGTGTTGTGGAAGAGAGGACAAAAAGTGTTCGCACTCGCATTACAGAGTCGGATCAGCGAGGTTGGAGCACCT GACTATCTTGAATATCATCTCTTTTTTTCCTTTTGATAAGTTCACTCATCATGCCTTAACTTTTCTTGCAGGTGTTCGGAGGAATTTCATGTTGATGGTG TTTGTTGGAGTAGCCGCAAAGATTGGAGAAGGAATATTGCTGGATCATGGAACAGGCGTGGTAATTGGAGAAACCGCTGTTGTTGGTAACCGAGTATCAT TGATGCATGGTGTTATTCTAAGAGGAAGCGGGAAAGAAAATGGAGATCGGCATCCGAAAGTGGGGGATGGAGCACTGATTGGAGCATGTGTGACAGTACT TGGGAACATCAAAATTGGTGAAGGGGCTATGATAGCTTCTGGATCTCTTGTATTGAAGGATGTCCCCCCACACAGCATGATGGCAGGAACACCAGCTAAA GTTATTGGATACGTTGATGAGAAAGATCCATCTCTAACTATGAATCACGATGCTACCAAAGATTTCTTCGAGTACGTAGCAGTCAGCAGCTATACTGAAG GAAAATTGAACAGTAAGTTTTGCTGTTCTGATATGTGA
AA sequence Show only first row Show all	>Lus10007424 pacid=23180226 polypeptide=Lus10007424 locus=Lus10007424.g ID=Lus10007424.BGIv1.0 annot-version=v1.0 MPITSDRNHTIFNNKPYHILSLNSMAQDTTLCLSMTGKQQQQQHNKSSYPFEKIFPVYAMGVSTPHSDSIIVNSVDHDHIWEAVQDEAKSEAEKEPILSS FLYASILSHDCLEQALSFVLSNRLHNPTLLQRRLPLSAKLQSRCCGREDKKCSHSHYRVGSARLEHLTILNIISFFPFDKFTHHALTFLAGVRRNFMLMV FVGVAAKIGEGILLDHGTGVVIGETAVVGNRVSLMHGVILRGSGKENGDRHPKVGDGALIGACVTVLGNIKIGEGAMIASGSLVLKDVPPHSMMAGTPAK VIGYVDEKDPSLTMNHDATKDFFEYVAVSSYTEGKLNSKFCCSDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35640		ATSERAT3;2	serine acetyltransferase 3;2 (...		Lus10007424 [exp]	0	1
					Lus10035197 [exp]	7.7	0.7057
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10009430 [exp]	9.4	0.7920
AT5G16940			carbon-sulfur lyases (.1.2)		Lus10000116 [exp]	9.5	0.6954
AT5G16940			carbon-sulfur lyases (.1.2)		Lus10018517 [exp]	9.8	0.7257
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10015307 [exp]	19.7	0.7360
AT5G26670			Pectinacetylesterase family pr...		Lus10000253 [exp]	22.6	0.7450
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10025032 [exp]	72.9	0.6596
AT3G25530		GR1, GLYR1, GHB...	glyoxylate reductase 1 (.1.2)		Lus10012301 [exp]	82.4	0.6632
AT5G36930			Disease resistance protein (TI...		Lus10000738 [exp]	85.8	0.6608
AT1G55790			Domain of unknown function (DU...		Lus10016345 [exp]	86.7	0.6297

Compare expression of checked genes

Lus10007424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.