Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23840 249 / 1e-82 HNH endonuclease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010678 [exp] 430 / 4e-154 AT2G23840 313 / 2e-107 HNH endonuclease (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059500 [exp] 302 / 1e-103 AT2G23840 340 / 4e-118 HNH endonuclease (.1) Potri.019G033200 [exp] 287 / 1e-97 AT2G23840 332 / 3e-115 HNH endonuclease (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0263 [flax] [poplar] His-Me_finger PF01844 [flax] [poplar] HNH HNH endonuclease
Representative CDS sequence Show only first row Show all	>Lus10007425 pacid=23180211 polypeptide=Lus10007425 locus=Lus10007425.g ID=Lus10007425.BGIv1.0 annot-version=v1.0 ATGGCTCAATTTACTACACAAGGCCGCCTCAAGTTTCTGTTTAACACTCGTGGTGGTGGTGGTGGAGCTCTCTATAAACATTTAGGCAGCGATTCTGTCA GATCATTTGAGCTCCACAAAGCCAGGCTTAGGTACTTATGCTCTTCCTCCGCCAGGCTCCATGCGAAGCCCAGCAAGTTCTATGCAGAAGCCAGGCGCGG CAGTGATGGCAGCAGCAATCGCGACAGTGAGACGACTGATGGCACAAATCATGACGAAGATTACGAAATTGAATTTCAGACTGATGAATTGGCTTGCTTC AGAGGCTTGGTCTTGGATATAGCTTACAGGCCAGTCAATGTTGTCTGCTGGAAGCGTGCTATATGTTTGGAATTCATGGAGAAGGCTGATGTGTTAGAAT ACTATGATCAGACAGTCAACTCTCCTAGTGGTTCTTACTACATTCCTGCCGTGCTAAGGCGTATCATGCCTTACCCGAACTACATGTTCCCTCATTTCAG GTACTGCTATTCAAGTGATAATTTGACCATCGATCATGTCTTCCCTGCTTCCCGGGGAGGAGAGTGGAAATGGGAGAATCTGGTGACAGCTTGTTCAAGG TGCAATTCGAAGAAGGGACAGAAGACTTTGGAGGAAGCAAATATGAAGCTCATTAAAGTGCCCAAGGCCCCTAAGGAGTACGAAATACTTGCAATACCAT TAACAAGTGCAGCGCTGATGATGCTAAGTAGTAAAAAAGGGACACCTGAAGAGTGGCGACAATATCTCCCACCACAGCCATGA
AA sequence Show only first row Show all	>Lus10007425 pacid=23180211 polypeptide=Lus10007425 locus=Lus10007425.g ID=Lus10007425.BGIv1.0 annot-version=v1.0 MAQFTTQGRLKFLFNTRGGGGGALYKHLGSDSVRSFELHKARLRYLCSSSARLHAKPSKFYAEARRGSDGSSNRDSETTDGTNHDEDYEIEFQTDELACF RGLVLDIAYRPVNVVCWKRAICLEFMEKADVLEYYDQTVNSPSGSYYIPAVLRRIMPYPNYMFPHFRYCYSSDNLTIDHVFPASRGGEWKWENLVTACSR CNSKKGQKTLEEANMKLIKVPKAPKEYEILAIPLTSAALMMLSSKKGTPEEWRQYLPPQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23840			HNH endonuclease (.1)		Lus10007425 [exp]	0	1
AT2G23840			HNH endonuclease (.1)		Lus10010678 [exp]	1.4	0.9234
AT5G35170			adenylate kinase family protei...		Lus10036326 [exp]	3.2	0.9283
AT1G10660			unknown protein		Lus10029133 [exp]	3.2	0.9090
AT5G03880			Thioredoxin family protein (.1...		Lus10017034 [exp]	7.5	0.9099
AT5G03880			Thioredoxin family protein (.1...		Lus10021357 [exp]	9.0	0.9131
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	10.4	0.9023
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019475 [exp]	18.5	0.8939
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	21.2	0.8835
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10016195 [exp]	21.5	0.8692
					Lus10001769 [exp]	21.9	0.8709

Compare expression of checked genes

Lus10007425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.