Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66030 737 / 0 ATGRIP, GRIP Golgi-localized GRIP domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010675 [exp] 1098 / 0 AT5G66030 637 / 0.0 Golgi-localized GRIP domain-containing protein (.1.2) Lus10010676 [exp] 236 / 2e-73 AT5G66030 177 / 1e-52 Golgi-localized GRIP domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099800 [exp] 892 / 0 AT5G66030 735 / 0.0 Golgi-localized GRIP domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01465 [flax] [poplar] GRIP GRIP domain
Representative CDS sequence Show only first row Show all	>Lus10007427 pacid=23180230 polypeptide=Lus10007427 locus=Lus10007427.g ID=Lus10007427.BGIv1.0 annot-version=v1.0 ATGTCAGCTCCAGAAGAAAATGCTGCTGGCAAGGCACCTGAGGATCACATGGAAGAGGCTTTCTTAGTTCATGATAAGCCCTTGTCTGACGTTCGCCATG GAAGCAATGGGAATCTTTCTAAGGAAAATGGATTGCTTCAAAGTAGCCAACTGGCTGACACGACACATGACGAGCTTCTGCAAATGGTTATTGAACTGAA GTTTCAGAATGACATACTGAAATCTCATTTTGATGACTTAAGAGATGGTAATGTGGAACATGATAGGTCTCACCTGAAAATAGAATCAGGTGGTCTTGAA TCAACAAGCTTGGGTAGTGTCAAAGAACTCAATGAACAGATTGAGTCATTGACTAAGGAACTTAACGTAGAGAAATTAACCCGCTGTGCAGCTGAGAAGG CTCTGAAACATCTCCGAGAATCTTACTCAGAGGCTGACCAGAAAGCCCAAGAACTCTCAGCTAAACTCTCTGAAGCCCAGCAGAAGTTGGACCAAGAAAC AAAAGAACGTGAAGATAAGTACTCTGACCTTGATTCCAAATTTCAAAGGCTTCATAAGAGAGCGAAACAACGGATACAAGAGGTTCAAAAGGAAAAGGAT GACCTCGAGGTGCAATATCGTGAAGCAAATGAAGCTTTTGAACGGGCTTCATCACAGCAGGCCACATTGGAGCAAGAGCTTGAGCGGACTAGGCAACAAG CAAATGAAGCATTGAAAGCAATGGATGCAGAGAGGCAACAATTAAGAAGTGCAAACAACAAGCTCCGGGATGATATTGAAGAATTGCGCCGATCCATGCA ACCAAAAGAAAGTGCTTTAGAGGAGTTGCAACAGACACTTTCAGATAAAGAGCAGATGCTGAAAGAACTGCGGGGGTTGCTACAATCTGCTGAAGAAAAA CAGCAAGCTTCTATATCTGAGCTTTCTGCCAAACATCAAAAGAGTGTAGAAAATTTGGAAGCGCAGATTGCTGATGCTTTAGCTGATAGGATGAGGGCTA CAGATAATATATCTTCATTGCAGGTGCTATTAGCGGAGAAAGAGTCAAAGATTGCAGAGATGGATGCGGCTTCCAGTGGTGAAACAGCACGTCTTAGAGC TTCTTTGGAACGCATGAAGGCAGAAATTGCTCACCAAAAACATGAACATGAGAAGGAGAAAGAAAGCCTTGAAGCTGATTTACAGGCACTCAAAATGAAA CTGGAAATATCCGAGAGCAACTGCATACGGGCTGAGATCGAAGCAGCTAAATTAAGAAGCCAACTGGATTCAGAAAAATCTGTTCAGAGCCAGATGCTCA ACAAAAAAGATGCTGAACTATTGGCAGCGAAACAAGAGATCAACCGCATTGAGACTGAATTTTCATCATATAAGGTCCGGGCTCATGCACTTCTCCAGAA GAAGGATGCTGAGCTTGCTGCAGCTAGTGACACCGAACAGATCCAGGCACTTGAAGACGAACTAAAAGATGCTGAAAGAGAACTATCTTTGGTGTCCAAA GAAAGGGATAAAGCTCTTCAGGATCTACAGAATATGTTAGCTGATCATAGTTCAAAACTCTCTGAAAGAAATGAAGCTCTAAAAGAGGCCCAGCAGGAGA TCAAGAGCATAGAACGAAAACTAGATTCTGCCATTTCGCATCACAAATCAGAGAAGCAATCGTGGGAGAGAAACCTTCAAGAGTTGGAAGAAACATGGAG ACTGAGGTGCGAGGCATTAAAAGCTGAGGCTGAAGCCTCTTCTGGGCAAGACATTCAAAGACATCTAGAAGAACTCAAACTTCAATATAAAAAGCTGAAG GAAGAGCACACTGCATTCCGTGACCTTGCTGATAGAATGATTGAGGTTAAAGACAAGGAAATATCAAAACTTATTGATGACAATAAGAAGCTTCTCCAGT CTCTAGAGTCTACCTCACGAGCTGATCAGAAGGAAAGCAACTTCACCGCCTTCTCAAAACAGGATGCACCAAATTTAAGTACCTCCGTTGCAGAACAACA GATTCTGCTTTTGGCAAGACAACAAGCTCAGAGGGAGGAAGAGCTAGGACAATCTCAGCGGCATATCTTAGCACTTCAAGAAGAGATTGAAGATCTTGAA CAGGAAAATCGTCTCCACAGCCAACAGGTCTCCATGTTGAAATCCGAGCTCCGAAGCATGGAAAGGACACAGAAGAGAGAGAGTGTTGACATGACATACC TAAAAAACATCATTGTAAAACTTCTTGAAACAGGCGAGGTGGAGGCGTTGCTCCCTGTTGTTGCGATGCTCCTACAATTCAGTCCTGAGGAGGTGCAGAA ATGTCGACAAGCATTCCGTACGTTGCAGGATGTTCCAGCACCAAATCCTGCTAATGATGCGTCAGGATCTGCTCTCAACATCCTCTCCAGATTCTCGTTT TCCTGA
AA sequence Show only first row Show all	>Lus10007427 pacid=23180230 polypeptide=Lus10007427 locus=Lus10007427.g ID=Lus10007427.BGIv1.0 annot-version=v1.0 MSAPEENAAGKAPEDHMEEAFLVHDKPLSDVRHGSNGNLSKENGLLQSSQLADTTHDELLQMVIELKFQNDILKSHFDDLRDGNVEHDRSHLKIESGGLE STSLGSVKELNEQIESLTKELNVEKLTRCAAEKALKHLRESYSEADQKAQELSAKLSEAQQKLDQETKEREDKYSDLDSKFQRLHKRAKQRIQEVQKEKD DLEVQYREANEAFERASSQQATLEQELERTRQQANEALKAMDAERQQLRSANNKLRDDIEELRRSMQPKESALEELQQTLSDKEQMLKELRGLLQSAEEK QQASISELSAKHQKSVENLEAQIADALADRMRATDNISSLQVLLAEKESKIAEMDAASSGETARLRASLERMKAEIAHQKHEHEKEKESLEADLQALKMK LEISESNCIRAEIEAAKLRSQLDSEKSVQSQMLNKKDAELLAAKQEINRIETEFSSYKVRAHALLQKKDAELAAASDTEQIQALEDELKDAERELSLVSK ERDKALQDLQNMLADHSSKLSERNEALKEAQQEIKSIERKLDSAISHHKSEKQSWERNLQELEETWRLRCEALKAEAEASSGQDIQRHLEELKLQYKKLK EEHTAFRDLADRMIEVKDKEISKLIDDNKKLLQSLESTSRADQKESNFTAFSKQDAPNLSTSVAEQQILLLARQQAQREEELGQSQRHILALQEEIEDLE QENRLHSQQVSMLKSELRSMERTQKRESVDMTYLKNIIVKLLETGEVEALLPVVAMLLQFSPEEVQKCRQAFRTLQDVPAPNPANDASGSALNILSRFSF S

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10007427 [exp]	0	1
AT5G28850			Calcium-binding EF-hand family...		Lus10029614 [exp]	1.0	0.8770
AT5G58100			unknown protein		Lus10027581 [exp]	4.2	0.8749
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10009122 [exp]	4.9	0.8158
AT1G20410			Pseudouridine synthase family ...		Lus10021236 [exp]	5.2	0.8386
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006252 [exp]	6.9	0.8283
AT4G01210			glycosyl transferase family 1 ...		Lus10008732 [exp]	8.5	0.8447
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	9.2	0.8651
AT2G26770		SCAB1	stomatal closure-related actin...		Lus10026809 [exp]	9.4	0.8167
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	9.5	0.8698
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	10.7	0.8644

Compare expression of checked genes

Lus10007427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.