Plant FIBer expression Database

Lus10007428 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54385 549 / 0 ARM repeat superfamily protein (.1.2)
AT3G03970 325 / 5e-104 ARM repeat superfamily protein (.1.2.3)
AT1G27210 44 / 0.0003 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010672
[exp]
1145 / 0 AT1G54385 556 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10002627
[exp]
517 / 1e-178 AT1G54385 394 / 7e-131 ARM repeat superfamily protein (.1.2)
Lus10020266
[exp]
501 / 3e-172 AT1G54385 402 / 4e-134 ARM repeat superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G058700
[exp]
711 / 0 AT1G54385 599 / 0.0 ARM repeat superfamily protein (.1.2)
Potri.019G033900
[exp]
707 / 0 AT1G54385 608 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10007428 pacid=23180218 polypeptide=Lus10007428 locus=Lus10007428.g ID=Lus10007428.BGIv1.0 annot-version=v1.0
ATGGGTAGGAGCCTGAGCCCATTGAAGAGAGAGTTGGCAAATCTTGATAAAGATGCCGAGAGTCGGAAATCAGCGATGAAGGCGCTGAAATCATATGTCA
AAGACATGGATTCTAGGGCCATTCCACTTTTTCTTGCCCAGGTTTCAGAGACTAAAGAAACTGGTGCTATATCTGGAGAATTTACCATATCACTTTACGA
AGTCCTTGCCCGTGTCCATGGAGTCAAGATTGTTTCTCAGATCGACCGTATCATGACTACTGTCATCAAGACCTTGTCAGCAACTGCAGTGTCTTTCCCT
CTCCAACAAGCGTGCTCCAAAGTTGTGCCTGCCATTGCAAGGTATGGTATCGAGCCCACGACTCCAGAAGTGGAGAAGAGACGCATAATTCATTCCCTGT
GCAAGCCTCTTGTCGAGGCTCTTTTGGGCGCTCAAGATAGCCTTACCTCAGGGGCTGCCCTTTGCTTGAAGGCTCTTGTGGACTCTGATAATTGGAGATT
TGCTTCTGATGAGATGGTGAACAAAGTCTGCCAGAATGTAGCTGTGGCGCTTGAGGAGCAGTCAACACAATCTAACTCCCATATGGGATTGGTTATGGCT
TTATCAAAGCGTAATGCTTTGATAGTTGAACCTTATGCAAGGTTGTTGATCCAGACTGGTTTGTCCATCCTGAATAATGCTGGTGGTGGTTTGCAAGACG
GTAATTCCCAGAAGCGTATGTCAGCAATCCAAATGATCAATTTCATGATGAAGTCCTTGGACCCGAGAAGTGTATTCTCCATGCTTGATCTAATCATTCT
GAATATGGAGAAATGTCAGTCAGATCAGCAGATGGCGTTTGTGAAAGGAGCTGCTTTTGAAGCTTTGCAAACAGCAAAGAAAATTTCTTCAGACGAAGCC
TCAAAGTTTGACAAGAGTTCTGGTGGTTCTGTCACAGGTTCTAACTTCAGTAAAAGGGATTCTAGAAGGAGAAGAAATCTGTCCAGTCCGGAATCGCAGA
CTCTTGGCTCTTTCATGGAGGAGTATGACTCTATGGTTGAGTCACCTCTAACAAGAACTCCAGTCTCGCATGCCCTTGGGTATGACTGGGGCTGTGAGTA
TGACAGCAGGAGTGTCAACCGTAAGCTATGGAGCCTTGAAAATGGAAGGCTGGATGTTTCGCTTAAAGATGGGTTATTTTCACAACTGACTCATGGAACT
CCTATCACTGATAGCTCAACTGAATATGAGGGTAATCGTGCAGCCGAGTTTTCGGGCTTCTTGCCAAAGAGTCCTAGAAACGGGCAGCTTAGGAGTTGCA
CGCCCAGTCCTCAGAGGTCACGTACACACCTAAATGTCGATAACATGAGCATCTTCACAAGCCCGAGGAAGCTCATCCGCTCGCTACAGGATTCTACTGT
TGTCGATCCGGAATTGAACGAGAAGTATAGCAGGCAGTTCAAAAGCCAGTGCACATGCAATTGCGATAGCAGTCCAACTTCAAAGTTGAACCAAAGGGAA
TTTGACAGGAACGATGATTCCAATGAGAATGAAAGGTCATATTTTGGTGAGAAGCCGTATGAGGATGCATCTGAGTCAGTTTCATCAACAGTTGATGATG
CTGCTGTCAATGCAGTGGAAATTGCAGGCATGAACAGGAAGGTGGGTGCTGGTGCTGAGAAGAAATCCAACTTGCAAAGCCAATTCATTAAGAAGCAGTA
CTGGAAAAGCAATGCTAGGTTTCTTGTTGCCTTTGTTTTGGCTATGTTATCAGGTTTTGCATCATTGATTTTGTTTGATGGTTCTGAGCAAGGCCAATTT
CTTACTCCGACATAG
AA sequence
>Lus10007428 pacid=23180218 polypeptide=Lus10007428 locus=Lus10007428.g ID=Lus10007428.BGIv1.0 annot-version=v1.0
MGRSLSPLKRELANLDKDAESRKSAMKALKSYVKDMDSRAIPLFLAQVSETKETGAISGEFTISLYEVLARVHGVKIVSQIDRIMTTVIKTLSATAVSFP
LQQACSKVVPAIARYGIEPTTPEVEKRRIIHSLCKPLVEALLGAQDSLTSGAALCLKALVDSDNWRFASDEMVNKVCQNVAVALEEQSTQSNSHMGLVMA
LSKRNALIVEPYARLLIQTGLSILNNAGGGLQDGNSQKRMSAIQMINFMMKSLDPRSVFSMLDLIILNMEKCQSDQQMAFVKGAAFEALQTAKKISSDEA
SKFDKSSGGSVTGSNFSKRDSRRRRNLSSPESQTLGSFMEEYDSMVESPLTRTPVSHALGYDWGCEYDSRSVNRKLWSLENGRLDVSLKDGLFSQLTHGT
PITDSSTEYEGNRAAEFSGFLPKSPRNGQLRSCTPSPQRSRTHLNVDNMSIFTSPRKLIRSLQDSTVVDPELNEKYSRQFKSQCTCNCDSSPTSKLNQRE
FDRNDDSNENERSYFGEKPYEDASESVSSTVDDAAVNAVEIAGMNRKVGAGAEKKSNLQSQFIKKQYWKSNARFLVAFVLAMLSGFASLILFDGSEQGQF
LTPT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G54385 ARM repeat superfamily protein... Lus10007428
[exp]
0 1
AT3G07170 Sterile alpha motif (SAM) doma... Lus10038185
[exp]
1.4 0.9121
AT1G54385 ARM repeat superfamily protein... Lus10010672
[exp]
2.8 0.9285
AT1G76310 CYCB2;4 CYCLIN B2;4 (.1) Lus10012261
[exp]
14.1 0.9044
AT4G34670 Ribosomal protein S3Ae (.1) Lus10041191
[exp]
15.0 0.8559
AT1G76310 CYCB2;4 CYCLIN B2;4 (.1) Lus10016015
[exp]
16.6 0.9017
AT1G05440 C-8 sterol isomerases (.1) Lus10041200
[exp]
17.1 0.8768
AT5G60930 P-loop containing nucleoside t... Lus10000392
[exp]
17.2 0.8988
AT5G26940 DPD1 defective in pollen organelle ... Lus10031465
[exp]
17.3 0.7434
AT1G50000 methyltransferases (.1.2) Lus10035666
[exp]
17.5 0.8041
AT3G02860 C2H2ZnF zinc ion binding (.1.2) Lus10037693
[exp]
17.7 0.8287

Lus10007428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.