Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64770 393 / 9e-137 PnsB2, NDH45, NDF2 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) AT1G55370 93 / 7e-21 NDF5 NDH-dependent cyclic electron flow 5 (.1.2) AT5G57330 44 / 0.0001 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010671 [exp] 656 / 0 AT1G64770 413 / 1e-144 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Lus10002626 [exp] 96 / 5e-22 AT1G55370 234 / 4e-74 NDH-dependent cyclic electron flow 5 (.1.2) Lus10020267 [exp] 94 / 5e-21 AT1G55370 234 / 2e-74 NDH-dependent cyclic electron flow 5 (.1.2) Lus10026106 [exp] 42 / 0.0004 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10000414 [exp] 42 / 0.0005 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1) Lus10020015 [exp] 42 / 0.0006 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 42 / 0.0007 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034100 [exp] 460 / 5e-163 AT1G64770 417 / 3e-146 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Potri.013G058601 [exp] 116 / 2e-32 AT1G64770 79 / 3e-19 Photosynthetic NDH subcomplex B 2, NAD\(P\)H DEHYDROGENASE SUBUNIT 45, NDH-dependent cyclic electron flow 1 (.1.2.3) Potri.019G034000 [exp] 108 / 2e-26 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2) Potri.001G037700 [exp] 47 / 1e-05 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 46 / 2e-05 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 45 / 6e-05 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 44 / 0.0001 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 42 / 0.0006 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007429 pacid=23180224 polypeptide=Lus10007429 locus=Lus10007429.g ID=Lus10007429.BGIv1.0 annot-version=v1.0 ATGGCTTCCCTTTTTCCCTTTTCACTTCCCAAACCAGGTATAGTCAGAGCCACTTCACTCTCTACAACCACTTCTCTTCCCACTTCAGACAGTGGTGATG TTGATACTGGGGCTGGCGGGGGCACACTTGAAGAAAGGTTTGGGAGAAAGGGAATCAAGTTCTCTGAAACCAGCAATAATGTCCCACTTGTTGAACTGAC TGTCAGAAATGGCAGCTCTCTGAAGCTCCAGATTCCAGATGCTCATATCACTTCCTACTTGCCAAAAGTCTACTGGAAGGATGATGGGTTTGAGGAAGTT CTCTACACAATTCCACCCATCACAATTCCACCAATTGGGAATGGAAAAAAATCAAAAGGCGGAATCGGTTTGGTTGTCTATGATGTCTCTCAACCGAAAC CTTCCCTTCTCACAGATTCTGAATGGTCTGTCAAAGCAGTGGATTCTGATGCCATTGATGCTCTCCAGGTTGAATTGGAGTGCAAAACTGGGAAACTTCA CATGACATACGTCGTGACATTGTATCCAGTGAGTGTTGCCACAGCAGTAATTGTGAGGAACAATGGGCTGAAGCCAGTGAATCTGACAAGTGCTATACTG AGTCACATGAGATTCAAATATAGAGGGAAGTCAGCAATCCAAGGACTTCGAGCATGTAACTACTGCACGCACCCGCCATTGTCTTCGCCTTTCGAGATAA TCACCCCTGGTGAAGCCATGAAGCCTGACTCCCCTAGACTCTTTGATTTCTTCTTTGAACCAGAGGAGAAACCTGGCATATGGAAAGTTCAGGATATACC CTTCACAATGCTTAACCACAGGCTTAGTAGAATCTATGCTGCTCCACCAGAGGAGAGATTGAAGCTATTCTATAACACTCCACCATCCAAATTTGAGACA CTTGATCAGGGAAGGGAGTTGTTCTTCAGGGTGATAAGGATGGGTTTTGAGGACATATATTTGTGTAGTCCAGGACCATTCTCAGAGAAGTATGGTGATG ACAAACATCATTTCATCTGCACAGGACCTGCTGCAATGCTGGTGCCTGTAGTTGTGGAACCTGGTGAACAGTGGAGGGGCGCTCAAGTTATAGAGCATGA CAACTTGTAG
AA sequence Show only first row Show all	>Lus10007429 pacid=23180224 polypeptide=Lus10007429 locus=Lus10007429.g ID=Lus10007429.BGIv1.0 annot-version=v1.0 MASLFPFSLPKPGIVRATSLSTTTSLPTSDSGDVDTGAGGGTLEERFGRKGIKFSETSNNVPLVELTVRNGSSLKLQIPDAHITSYLPKVYWKDDGFEEV LYTIPPITIPPIGNGKKSKGGIGLVVYDVSQPKPSLLTDSEWSVKAVDSDAIDALQVELECKTGKLHMTYVVTLYPVSVATAVIVRNNGLKPVNLTSAIL SHMRFKYRGKSAIQGLRACNYCTHPPLSSPFEIITPGEAMKPDSPRLFDFFFEPEEKPGIWKVQDIPFTMLNHRLSRIYAAPPEERLKLFYNTPPSKFET LDQGRELFFRVIRMGFEDIYLCSPGPFSEKYGDDKHHFICTGPAAMLVPVVVEPGEQWRGAQVIEHDNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Lus10007429 [exp]	0	1
AT3G21055		PSBTN	photosystem II subunit T (.1)		Lus10027359 [exp]	1.7	0.9715
AT2G23580		ATMES4, ABE4	ARABIDOPSIS THALIANA METHYL ES...		Lus10005402 [exp]	2.0	0.9610
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Lus10010671 [exp]	2.4	0.9687
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10009203 [exp]	4.5	0.9371
AT5G16720			Protein of unknown function, D...		Lus10010755 [exp]	4.8	0.9204
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Lus10022235 [exp]	4.9	0.9435
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10014669 [exp]	5.2	0.9661
AT1G51400			Photosystem II 5 kD protein (....		Lus10014908 [exp]	5.5	0.9539
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	6.2	0.9313
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Lus10006931 [exp]	6.7	0.9600

Compare expression of checked genes

Lus10007429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.