Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03960 952 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT3G18190 243 / 3e-73 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 217 / 1e-63 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT5G26360 210 / 7e-61 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 207 / 6e-60 TCP-1/cpn60 chaperonin family protein (.1.2) AT1G24510 201 / 9e-58 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G20890 178 / 3e-49 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 157 / 1e-41 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 157 / 1e-41 TCP-1/cpn60 chaperonin family protein (.1) AT4G08640 95 / 2e-22 ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010670 [exp] 1109 / 0 AT3G03960 952 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10002625 [exp] 1053 / 0 AT3G03960 936 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008670 [exp] 227 / 2e-67 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10037214 [exp] 220 / 1e-64 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10042966 [exp] 216 / 4e-63 AT3G20050 991 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10032467 [exp] 216 / 4e-63 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10034682 [exp] 215 / 9e-63 AT5G26360 1016 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10021150 [exp] 214 / 2e-62 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008406 [exp] 214 / 3e-62 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034200 [exp] 1003 / 0 AT3G03960 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.013G058500 [exp] 1001 / 0 AT3G03960 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 235 / 3e-70 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.012G051300 [exp] 234 / 3e-70 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 228 / 1e-67 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.002G142700 [exp] 218 / 6e-64 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.009G157400 [exp] 216 / 6e-63 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.004G195300 [exp] 213 / 1e-61 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.018G138200 [exp] 207 / 1e-59 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 206 / 2e-59 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10007430 pacid=23180229 polypeptide=Lus10007430 locus=Lus10007430.g ID=Lus10007430.BGIv1.0 annot-version=v1.0 ATGGGTTTCTCAATGCAGCCGTACGGTATACAATCAATGCTGAAGGAGGGACACAAGCATCTTTCCGGTCTAGACGAAGCCGTCATCAAGAACATTGACG CTTGCAAGCAGCTCTCCACCATCACCCGCACCTCTCTCGGTCCAAATGGTATGAATAAAATGGTTATCAACCATCTGGACAAGCTTTTTGTCACCAACGA TGCCGCAACCATTGTGAACGAGCTTGAAGTTCAGCATCCTGCTGCCAAGATTTTGGTATTGGCTGCAAAGGCCCAGCAGGAAGAAATAGGCGATGGAGCT AACTTGACCATCTCTTTTGCCGGTGAGCTCCTTCAGAATGCCGAAGAGCTGATCAGGATGGGCCTTCATCCTAGTGAGATCATCAGTGGCTACACCAAGG CCATTGCCAAGGCGATCGAAATATTGGATGAATTGGTAGAGAAAGGTTCTGAAACAATGGATGTCAGGGACAAGGACCAAGTTGTTTCTCGGATGAGGGC TGCTGTTGCTAGCAAGCAATTTGGACAAGAAGATATCTTGTGCAATCTTATAGCTGATGCCTGCATACAAGTTTGTCCCAAAAACCCAGCAAGCTTCAAT GTGGATAATGTCCGTGTTGCAAAGCTTGTTGGAGGAGGTTTGAACAATAGTGCCATTGTTCGTGGAATGGTATTGAAAAGTGATGCTGTTGGTACAATAA AGAAAATAGAGCAGGCCAAGGTTGCTGTATTTGTTGGCGGTGTTGATACATCTGCAACTGAGACCAAAGGAACTGTCCTAATTAACACCGCTGAGCAGCT ACAAAATTATGCAAAAACTGAGGAAGCTAAAGTTGAGGAGCTTATCAAGGCAGTGGCTGATTCTGGTGCTAAAGTTATTGTCAGTGGTGGATCTGTTGGA GAGATGGCCCTACATTTCTGCGAACGATACAAGCTCATGGTTTTGAAGATTAGTTCAAAATTTGAATTGAGGCGATTTTGTCGCACCACTGGTTCTATTG CAATGTTGAAGCTTAGCCCACCAAATCCAGATGATTTAGGACATGTGGATTCTGTTTCAGTTGAGGAGATTGGTGGGGCAAGGGTCACTATTGTGAGAAA TGAAGAAGGTGGAAACTCAATCAGTACGGTTCTCTTGCGAGGAAGCACTGAAAGTATATTGGATGACCTTGAAAGAGCTGTTGATGATGGAGTTAATACC TACAAAGCAATGTGCAGAGATAGTCGCACAGTACCTGGAGCAGCAGCTACTGAAATTGAGTTAGCTAGACGAGTGAAGGAGTTCTCGTTTAAAGAAACAG GATTGGATCAGTACGCCATTGCAAAGTTTGCAGAAAGTTTTGAGATGGTTCCAAACACACTTGCTGAGAATGCCGGCCTTGATGCAATGGAGATAATATC TTCTCTTTATGCTGAACATGCATCTGGAAATGCAAAAGTAGGCATCGACTTAGAGGAAGGTGTTTGCAAGGATGTAACGGTCACAAATGTCTGGGATCTC CACGTGACGAAGTATTTTGCCCTCAAGTATGCTGCTGATGCTGCCTGCACCGTGTTGCGAGTAGATCAGATTATAATGGCGAAACAAGCAGGTGGGCCGA GGAGAGACCAAGCTGCAGCAGCAGGAGCAGGGATGGATGAAGACTAG
AA sequence Show only first row Show all	>Lus10007430 pacid=23180229 polypeptide=Lus10007430 locus=Lus10007430.g ID=Lus10007430.BGIv1.0 annot-version=v1.0 MGFSMQPYGIQSMLKEGHKHLSGLDEAVIKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKILVLAAKAQQEEIGDGA NLTISFAGELLQNAEELIRMGLHPSEIISGYTKAIAKAIEILDELVEKGSETMDVRDKDQVVSRMRAAVASKQFGQEDILCNLIADACIQVCPKNPASFN VDNVRVAKLVGGGLNNSAIVRGMVLKSDAVGTIKKIEQAKVAVFVGGVDTSATETKGTVLINTAEQLQNYAKTEEAKVEELIKAVADSGAKVIVSGGSVG EMALHFCERYKLMVLKISSKFELRRFCRTTGSIAMLKLSPPNPDDLGHVDSVSVEEIGGARVTIVRNEEGGNSISTVLLRGSTESILDDLERAVDDGVNT YKAMCRDSRTVPGAAATEIELARRVKEFSFKETGLDQYAIAKFAESFEMVPNTLAENAGLDAMEIISSLYAEHASGNAKVGIDLEEGVCKDVTVTNVWDL HVTKYFALKYAADAACTVLRVDQIIMAKQAGGPRRDQAAAAGAGMDED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10007430 [exp]	0	1
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10032176 [exp]	1.0	0.9430
AT5G15610			Proteasome component (PCI) dom...		Lus10030706 [exp]	2.0	0.9388
AT2G46290			Transducin/WD40 repeat-like su...		Lus10021857 [exp]	3.2	0.9234
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10017585 [exp]	3.9	0.9320
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Lus10034066 [exp]	4.0	0.9312
AT5G41970			Metal-dependent protein hydrol...		Lus10008867 [exp]	5.5	0.8962
AT5G53480			ARM repeat superfamily protein...		Lus10034318 [exp]	9.8	0.9218
AT4G28200			unknown protein		Lus10003351 [exp]	10.9	0.9194
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10005351 [exp]	11.8	0.9056
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	13.4	0.9093

Compare expression of checked genes

Lus10007430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.