Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21720 750 / 0 Plant protein of unknown function (DUF639) (.1) AT1G48840 303 / 6e-93 Plant protein of unknown function (DUF639) (.1) AT3G18350 287 / 4e-87 Plant protein of unknown function (DUF639) (.1) AT5G23390 281 / 2e-84 Plant protein of unknown function (DUF639) (.1) AT1G71240 160 / 8e-41 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010668 [exp] 1271 / 0 AT2G21720 775 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10013865 [exp] 316 / 6e-98 AT3G18350 897 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10026581 [exp] 297 / 3e-90 AT1G48840 870 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10020973 [exp] 291 / 2e-88 AT1G48840 899 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010155 [exp] 279 / 2e-83 AT5G23390 781 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10002408 [exp] 168 / 2e-43 AT1G71240 941 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10027905 [exp] 143 / 5e-35 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G062700 [exp] 903 / 0 AT2G21720 839 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.012G055800 [exp] 327 / 6e-102 AT1G48840 894 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.015G046500 [exp] 315 / 1e-97 AT1G48840 942 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.008G003000 [exp] 306 / 1e-93 AT5G23390 730 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.001G210200 [exp] 161 / 2e-41 AT1G71240 968 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF04842 [flax] [poplar] DUF639 Plant protein of unknown function (DUF639)
Representative CDS sequence Show only first row Show all	>Lus10007431 pacid=23180217 polypeptide=Lus10007431 locus=Lus10007431.g ID=Lus10007431.BGIv1.0 annot-version=v1.0 ATGAAGCACCTCTCCACCATCGCTAATGACATTGTCAACAGATGCGCCCTAAGGGTGGAGGTAAGCGTGGAGGAATTGGTGGAAGAGTTTGAAAGAGAAG TATGGAAGGAGGAAACAGGGGATAATTACTCGAGGAAGTTTATTGAATTCTGTTGCTCAAAGGCATTGAGGAAAGATTGCCAATTCATAGAGGAAAAGAT TGTGGATGGATCCTTTTCACGCTTCACTTTCGACATGATGCTCGCCTGGGAAACTCCCACTTCCATCCACGAGCAATCTATCTCCGAAAACATAGGGAAG GGTTTAGAAGACAGGAGGAAGATACCGTCCAAAGTTACTGGAGAAACTGATGAAATCCCACTGTTCTACACTGACCTTATGCCCCTCCTTGTTGACGAGG AGGCCAGTGTGGGGGAAGATGCAGTTGTTTGGTTGGGAACATTGGTCCCATTGGTCGTGGATTTCGTCAATGCGAGGTTTACATTCGAGACACTGACTGC AGCTACTGCCCACTGCCTGTTCTACCCTGCCTACGATAAGTTCTTGAAAGAAATTGACCAAAGCATAAAGAATCTGCAGAAACAAACTAAACCCAAAGGC ATACAACTTGCTGATGAAGAGTTCATACTTCACGTTGATGGCACCGCCAGTTCCCAGAGAGTTGTGCGCCACATTGGTGGCACCAGCTGGCCTGGTAGGC TGACACTTACCAATTACGCTCTCTACTTTGAGGCATCTGGGGTGATCACATATGAAGATGCTCTTAAAATCGACCTCTCTACCGATACCAAACACAGTGT CAAAGCCACTGCCACTGGCCCCTGGGGTGCTCCATTTTTCGATAGGGCCATCGTCTACGAATCCCCTGAATCCTCGGAAGGCATTGTTCTGGAGTTTCCA GAGATGACAAGCTCCACCAGACGTGATCATTGGCTTGCACTCGTCAAGGAGGTCATCTTAATGCACCAGTTCCTGTCGAGGTATAATGTGAAATGTCCGA TGCAAGCATGGGAGATCCATTCGAGGACGATACTCGGGATAGTGAGGCTCCATGCAGCTAGAGAGCTGCTGCGAATAACACCACCGGACCCTACAAAATT CCTCATATTCGCCTTATATGACGAGCTGCCAAAGGGAGACTACGTGCTGGATCAGGTTGCTGCGAGCATAGAGAAGGTCGACAGTGGACACCCTTGCAGT GCTAGTTCAATCCTGAGGAATATAAATGTATCTCAGCTACTTACTTCTAGTGGAGAAGTTAAAAAGGGTAAAGAGGATGAACCTGCGAATAATGCTGGTT TACCAGACGATGAGATACATTCCTCTCTAGAAGATGCTGTTGATAGAGTGAGGGAAGAAGCTAAGGAGGTTGACATTGCCAAGGCCACTGCAGAGGGCTT AAAAGAGGAAGGAATTGGTGAAAGCGCTCAAGTCCTTATGGAACTGCTCAAGCCGATCAGAGATCTACTACCGTGGTTTCTTGTGATCATTTCGTGGGAG AGGCCATTGGCATCGCTTCTTGTATTCGTCACAACTATAGTAATCATCTACAAGGAGTGGGTGGGGCAAGCATTAGCTGTTTTCTTGGTCCGGGGTGCAT TGAGGATACTACAAGCTAGACGAGGGCGATCACACAAGCAAAGCAACGAGATAGTAGTGTACACCGGGGGAAGAGAACAAAAGAGCACAACTGAGAACAT TGTGGCGGCTCAGTTCGGATTGAGAACTGTACACGAGGTGATGCAAGCAGCTAACATAGCTATACTAAAGATTTGGTCTCTGATGTCTGCCAAAGCTCCA AAGGTGCAATCAGACATGGCTATGGTGGCCATGGGTTCCTTGGCAATCATATTGGCTGTAATTCCTTTGAAGTATATCCTAATGGGTGGAGTTGTATACT ACGGGATTATGACATCGAAACTAGGGAAGCGAATGGAGAATGATCATGGGAATAGAAGGCTCAAGGAATGGTGGGATTCAATTCCAGTCGTCCATGTCCG TATCGTTGATGAACCTCCTCCGCCTTCACCTCCGCTCCCAGAGAAGAAGGATACTTAA
AA sequence Show only first row Show all	>Lus10007431 pacid=23180217 polypeptide=Lus10007431 locus=Lus10007431.g ID=Lus10007431.BGIv1.0 annot-version=v1.0 MKHLSTIANDIVNRCALRVEVSVEELVEEFEREVWKEETGDNYSRKFIEFCCSKALRKDCQFIEEKIVDGSFSRFTFDMMLAWETPTSIHEQSISENIGK GLEDRRKIPSKVTGETDEIPLFYTDLMPLLVDEEASVGEDAVVWLGTLVPLVVDFVNARFTFETLTAATAHCLFYPAYDKFLKEIDQSIKNLQKQTKPKG IQLADEEFILHVDGTASSQRVVRHIGGTSWPGRLTLTNYALYFEASGVITYEDALKIDLSTDTKHSVKATATGPWGAPFFDRAIVYESPESSEGIVLEFP EMTSSTRRDHWLALVKEVILMHQFLSRYNVKCPMQAWEIHSRTILGIVRLHAARELLRITPPDPTKFLIFALYDELPKGDYVLDQVAASIEKVDSGHPCS ASSILRNINVSQLLTSSGEVKKGKEDEPANNAGLPDDEIHSSLEDAVDRVREEAKEVDIAKATAEGLKEEGIGESAQVLMELLKPIRDLLPWFLVIISWE RPLASLLVFVTTIVIIYKEWVGQALAVFLVRGALRILQARRGRSHKQSNEIVVYTGGREQKSTTENIVAAQFGLRTVHEVMQAANIAILKIWSLMSAKAP KVQSDMAMVAMGSLAIILAVIPLKYILMGGVVYYGIMTSKLGKRMENDHGNRRLKEWWDSIPVVHVRIVDEPPPPSPPLPEKKDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21720			Plant protein of unknown funct...		Lus10007431 [exp]	0	1
					Lus10002009 [exp]	3.9	1.0000
					Lus10010663 [exp]	5.5	1.0000
					Lus10025056 [exp]	5.7	1.0000
					Lus10014229 [exp]	8.7	1.0000
AT3G26140			Cellulase (glycosyl hydrolase ...		Lus10032312 [exp]	9.4	1.0000
AT2G39518			Uncharacterised protein family...		Lus10031304 [exp]	9.5	1.0000
AT4G03230			S-locus lectin protein kinase ...		Lus10031602 [exp]	10.2	1.0000
AT5G64820			unknown protein		Lus10025572 [exp]	10.6	1.0000
					Lus10033171 [exp]	11.6	1.0000
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006721 [exp]	12.8	1.0000

Compare expression of checked genes

Lus10007431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.