Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53470 70 / 3e-13 ACBP1 acyl-CoA binding protein 1 (.1) AT2G03430 69 / 4e-13 Ankyrin repeat family protein (.1) AT2G31800 69 / 1e-12 Integrin-linked protein kinase family (.1) AT5G07840 63 / 9e-12 PIA1 phytochrome interacting ankyrin-repeat protein 1, Ankyrin repeat family protein (.1) AT5G40160 64 / 2e-11 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT5G61230 62 / 2e-11 PIA2, ANK6 phytochrome interacting ankyrin-repeat protein 2, ankyrin repeat protein 6, Ankyrin repeat family protein (.1) AT5G02620 64 / 7e-11 ATANK1, ANK1 ankyrin-like1 (.1) AT3G59830 62 / 2e-10 Integrin-linked protein kinase family (.1) AT5G20350 61 / 6e-10 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT4G32500 61 / 6e-10 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010667 [exp] 338 / 2e-115 AT2G03430 82 / 5e-18 Ankyrin repeat family protein (.1) Lus10020272 [exp] 280 / 3e-90 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002621 [exp] 225 / 1e-70 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10003748 [exp] 94 / 5e-21 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10028039 [exp] 84 / 5e-18 AT3G02850 60 / 1e-17 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10036990 [exp] 70 / 5e-13 AT5G14230 510 / 5e-174 unknown protein Lus10015811 [exp] 68 / 3e-12 AT5G14230 727 / 0.0 unknown protein Lus10033816 [exp] 65 / 3e-12 AT5G07840 232 / 1e-78 phytochrome interacting ankyrin-repeat protein 1, Ankyrin repeat family protein (.1) Lus10018958 [exp] 64 / 4e-12 AT5G07840 228 / 3e-77 phytochrome interacting ankyrin-repeat protein 1, Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G062000 [exp] 272 / 4e-87 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 95 / 3e-21 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.002G213200 [exp] 92 / 1e-20 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.010G161300 [exp] 74 / 6e-15 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.001G333600 [exp] 76 / 8e-15 AT5G14230 975 / 0.0 unknown protein Potri.007G142100 [exp] 65 / 3e-11 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2) Potri.017G007800 [exp] 64 / 6e-11 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.001G129800 [exp] 61 / 9e-11 AT5G61230 206 / 2e-68 phytochrome interacting ankyrin-repeat protein 2, ankyrin repeat protein 6, Ankyrin repeat family protein (.1) Potri.010G057300 [exp] 63 / 1e-10 AT5G14230 843 / 0.0 unknown protein Potri.003G103400 [exp] 60 / 3e-10 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Lus10007432 pacid=23180225 polypeptide=Lus10007432 locus=Lus10007432.g ID=Lus10007432.BGIv1.0 annot-version=v1.0 ATGGATCGGCTCATCAAATTGGAGCCGTCAAATGTTGCGGCGATCAGGATAGAGCCAGGCCACAAGTGCTCCGGCGAGCTCACTCTCCGCAACGTCATGT ACACTATGCCCGTAGCTTTCCGGATTCAACCCCTCAACAAGAATCGTTACTCCATCAAACCTCAATCCGGCATCATTTCCCCTCTCGCAACCCAATCCGT CGAAATCACATACATCCTCCCTCCCGGCTCTAACCTCCCCGACGCATTCCCTCGCTCCGAGGATTCCTTCCTCCTTCACAGCGTCGTCGTCCCCGGCGCC GCCATCAAGGATCAAACCTCCGCCCTCGCCGCCGCCCCAAACGCCTGGCTCCTCACCACGACGAAACCACTGCACAATCATGCGGCGGATTCAGTGGGTC CACACGGCGAGCCTCTTCTCCATATTGCGATTTCTCACGGAAGGCCGGATATCGTTCAATTGTTACTCGAATTCGGACCGGATGTTGAGTTCAGGAGCCG GTCCGGGTCCACTCTGTTGGAAGCTTCTGCCGGGGCGGAATTGATAGAGAACGGAGCGGCGGTGAACGGCCGAGACCAGCACGGATGGACGGCTCTCCAC AGGGCGTCTTTCAAAGGTAAAATTGAGGCGGTTCGGACGCTTCTGGATAAAGGAATCGACATCGATTCCAAGGACGAGGACGGATACACAGCTCTCCACT GCGCGGTAGAGGCCGGGCACGCTGACGTCATCGAGCTGTTGGTGAAGAAGAAAGCCGACTTGGAGGCGCGTACGAACAAAGGCGTCAGCGCGTTACAAAT TGCTGAGTCTTTGCATTACGTTGGGATCACTAGGGTATTGATAGCCGGTGGCGCGTCCAAAGACAGTGGAAACCCCCAAGTGACGGCTCCGACTCATGCG GCGTTTGGAAACATGTTAATGGCCGGGAAAGATGCGGAGAAGCCGGTGAAAAAGAGGCCGGTAAGGGCAAGGGCAATGCAAAACAGCTTCGACCGGTCGA CGGCGGCGCTCGCTCTTTTATAG
AA sequence Show only first row Show all	>Lus10007432 pacid=23180225 polypeptide=Lus10007432 locus=Lus10007432.g ID=Lus10007432.BGIv1.0 annot-version=v1.0 MDRLIKLEPSNVAAIRIEPGHKCSGELTLRNVMYTMPVAFRIQPLNKNRYSIKPQSGIISPLATQSVEITYILPPGSNLPDAFPRSEDSFLLHSVVVPGA AIKDQTSALAAAPNAWLLTTTKPLHNHAADSVGPHGEPLLHIAISHGRPDIVQLLLEFGPDVEFRSRSGSTLLEASAGAELIENGAAVNGRDQHGWTALH RASFKGKIEAVRTLLDKGIDIDSKDEDGYTALHCAVEAGHADVIELLVKKKADLEARTNKGVSALQIAESLHYVGITRVLIAGGASKDSGNPQVTAPTHA AFGNMLMAGKDAEKPVKKRPVRARAMQNSFDRSTAALALL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31800			Integrin-linked protein kinase...		Lus10007432 [exp]	0	1
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	8.1	0.8537
AT5G05340			Peroxidase superfamily protein...		Lus10030148 [exp]	9.6	0.7753
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Lus10030629 [exp]	12.4	0.8504
AT4G15490		UGT84A3	UDP-Glycosyltransferase superf...		Lus10019809 [exp]	16.7	0.8524
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10008417 [exp]	16.7	0.8327
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	17.5	0.8565
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10014710 [exp]	22.8	0.8318
					Lus10010742 [exp]	22.9	0.8037
					Lus10032951 [exp]	37.1	0.7892
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	45.4	0.8268

Compare expression of checked genes

Lus10007432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.