Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49890 960 / 0 ATCLC-C, CLC-C chloride channel C (.1) AT5G33280 790 / 0 Voltage-gated chloride channel family protein (.1) AT5G40890 652 / 0 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2) AT3G27170 645 / 0 ATCLC-B, CLC-B chloride channel B (.1) AT5G26240 448 / 3e-146 ATCLC-D, CLC-D chloride channel D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024466 [exp] 1207 / 0 AT5G49890 1189 / 0.0 chloride channel C (.1) Lus10038118 [exp] 785 / 0 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1) Lus10012526 [exp] 659 / 0 AT3G27170 1264 / 0.0 chloride channel B (.1) Lus10002453 [exp] 463 / 7e-152 AT5G26240 1278 / 0.0 chloride channel D (.1) Lus10010531 [exp] 447 / 9e-146 AT5G26240 1242 / 0.0 chloride channel D (.1) Lus10041567 [exp] 217 / 2e-64 AT3G27170 456 / 1e-156 chloride channel B (.1) Lus10041568 [exp] 134 / 9e-36 AT5G40890 273 / 1e-87 CHLORIDE CHANNEL-A, chloride channel A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G001500 [exp] 1028 / 0 AT5G49890 950 / 0.0 chloride channel C (.1) Potri.004G228300 [exp] 1026 / 0 AT5G49890 983 / 0.0 chloride channel C (.1) Potri.T046200 [exp] 943 / 0 AT5G49890 947 / 0.0 chloride channel C (.1) Potri.018G138100 [exp] 936 / 0 AT5G49890 935 / 0.0 chloride channel C (.1) Potri.006G064000 [exp] 806 / 0 AT5G33280 1181 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.018G124100 [exp] 789 / 0 AT5G33280 1167 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.001G331700 [exp] 653 / 0 AT3G27170 1259 / 0.0 chloride channel B (.1) Potri.010G090100 [exp] 471 / 3e-155 AT5G26240 1149 / 0.0 chloride channel D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF00654 [flax] [poplar] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Lus10007433 pacid=23178404 polypeptide=Lus10007433 locus=Lus10007433.g ID=Lus10007433.BGIv1.0 annot-version=v1.0 ATGGAGGATCATGGAGAGGACAATGATATAGAGATAGAATCAGGTGGAGGGATTGGAGATGACAAGGATTTCAGGTCAATAAGGGAGCCACTCCTGCTCA GGAACAGGCAGAACAATACTTCTCAGATTGCCATTGTTGGTGCCAACGTTTGTCCCATTGAAAGCCTTGATTATGAGATTGTGGAGAATGAATTATTTAA GCAAGATTGGAGGTCGAGAAAGAAAGTTGAGATATTTCAATATGTTATCCTTAAGTGGGCACTTGCCCTTCTGATTGGATTGGGAACCGGGCTTGTTGGC TTTTTCAACAACATTGCAGTTGAGAATGTTGCTGGATTTAAGCTTCTCTTGACCAACAGTCTCATGCTAAAGGACAAATATTACCTGGCATTTGGAGCAT TTGCTGGTTGCAATATGGTTTTGGCCGCCGCCGCTGCTGCCCTTTGTGCTTACATAGCTCCTGCCGCAGCTGGTTCTGGGATACCTGAAGTTAAAGCATA CCTTAATGGCGTAGATGCTCCTTCTATACTCGCTCCAAGCACTCTTTTTGTAAAGATTTTTGGGTCCATCTTTGGGGTTGCTGCTGGATTGGTTGTGGGA AAGGAGGGACCAATGGTGCATACTGGTGCTTGCATAGCCGCCTTGCTTGGACAAGGCGGTTCTAAGAAGTATCATTTAACATGGAGATGGTTGAGGCACT TCAAGAATGACCGGGATAGACGAGATTTGGTGACTTGCGGTGCTGCAGCTGGTGTGGCAGCTGCTTTCCGTGCTCCTGTTGGTGGCGTTCTATTTGCTCT TGAGGAAGCTGCTTCATGGTGGAGGAGTGCTCTACTCTGGAGAACTTTCTTTACAACTGCTGTAGTTGCAGTGGTGTTAAGAGGTTTCATGGACTTCTGT AAATCCGGAAGATGTGGGCTTTTCGGTGAAGGAGGTCTAATCATGTTTGATGTCAACTCATCAACTGCCGGTTACGGCACCCCGGATCTGTTGGCAATCA TTTTTCTTGGTGTTCTCGGAGGCCTTTTGGGAAGCTTGTACAATTATCTAGTTGACAAGGTCCTTCGCACTTATAGCATCATCAACGAGAAGGGTCCCAT ATTCAAGATCCTACTTGTCATGTGCATTTCCCTTCTGACTTCTTGTTGCTCTTATGGTCTCCCATGGCTTTCAGCATGCACACCCTGCCCTCCCCACCTG GGAGAGCAATGTCCCACTGCTGGCCGCTCCGGAAATTACAAGAATTTCCAATGTGCAGAAGGACAATACAATGACCTTGCTTCTCTCTTCTTCAACACAA ACGATGATGCCATACGCAATCTGTTGAGCTCCGGGAGTTCAAAACAGTTCTACATCCCAACCCTCTTGGTTTTCTTTGGTGCTATATATTTCCTCGGCAT AGTTACTTATGGCACTGCAGTTCCTTCTGGTCTCTTCATTCCTGTCATTCTTGCTGGCGGGTCATATGGTCGTCTAGTTGGGCGCTTGCTTGGTTCCTGG TCTCAACTCGATGCCGGTATCTTTGCTCTCCTTGGTGCTGCATCTTTCCTCGGTGGCACGATGAGAATGACGGTCTCGCTATGTGTGATACTTCTGGAAC TCACGAACGACCTGCTGATGCTTCCGTTGATGATGTTGGTTCTCCTGATCTCGAAAACAGTGGCAGATACTTTCAACAAGGGTGTTTATGACCAGATTGT TAAGATGAAAGGATTACCATACATGGAAGCTCACGCAGAGCCATACATGAGGCAGTTAGTAGCAGGAGATGTTGTTTCCGGCCCATTGTTCACCTTCACC GGGGTTGAGAAAGTTGGGAACATTTGGCATGCATTGAAACTAACCAGGCACCATGGTTTCCCCGTGATAGACGAACCACCTTACACAGATGCACCTGAGT TGTGTGGGCTGGTGCTGAGGTCTCATCTCCTTGTTTTGCTTAAAGGGAAGAAGTTCACAAAGCAAAAGATGATGACAGGGTCTGAAATCATCCGGAGGTT CAAGGCACATGATTTTGCGAAAGCCGGTTCAGGCAAGGGCGTTAAGCTGGAGGAGTTGGATATATCTGAGGAGGAGATGGAGATGTATGTTGATCTGCAC CCCATCACCAATACATCACCTTACACTGTCGTCGAGACTATGTCCCTGGCGAAAGCGGCTGTTCTTTTCCGGGAGCTTGGCCTTCGTCACCTTTTGGTCG TGCCAAAAACGCCAGGGCGACCTCCCATCGTTGGAATCCTGACGCGGCACGATTTTGTACCGGAGCACATCCTAGGACTTTACCCCCAAGTCAACCCTCA CAAGTAG
AA sequence Show only first row Show all	>Lus10007433 pacid=23178404 polypeptide=Lus10007433 locus=Lus10007433.g ID=Lus10007433.BGIv1.0 annot-version=v1.0 MEDHGEDNDIEIESGGGIGDDKDFRSIREPLLLRNRQNNTSQIAIVGANVCPIESLDYEIVENELFKQDWRSRKKVEIFQYVILKWALALLIGLGTGLVG FFNNIAVENVAGFKLLLTNSLMLKDKYYLAFGAFAGCNMVLAAAAAALCAYIAPAAAGSGIPEVKAYLNGVDAPSILAPSTLFVKIFGSIFGVAAGLVVG KEGPMVHTGACIAALLGQGGSKKYHLTWRWLRHFKNDRDRRDLVTCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMDFC KSGRCGLFGEGGLIMFDVNSSTAGYGTPDLLAIIFLGVLGGLLGSLYNYLVDKVLRTYSIINEKGPIFKILLVMCISLLTSCCSYGLPWLSACTPCPPHL GEQCPTAGRSGNYKNFQCAEGQYNDLASLFFNTNDDAIRNLLSSGSSKQFYIPTLLVFFGAIYFLGIVTYGTAVPSGLFIPVILAGGSYGRLVGRLLGSW SQLDAGIFALLGAASFLGGTMRMTVSLCVILLELTNDLLMLPLMMLVLLISKTVADTFNKGVYDQIVKMKGLPYMEAHAEPYMRQLVAGDVVSGPLFTFT GVEKVGNIWHALKLTRHHGFPVIDEPPYTDAPELCGLVLRSHLLVLLKGKKFTKQKMMTGSEIIRRFKAHDFAKAGSGKGVKLEELDISEEEMEMYVDLH PITNTSPYTVVETMSLAKAAVLFRELGLRHLLVVPKTPGRPPIVGILTRHDFVPEHILGLYPQVNPHK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10007433 [exp]	0	1
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10012999 [exp]	2.0	0.8918
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10042217 [exp]	3.7	0.9031
AT4G32760			ENTH/VHS/GAT family protein (....		Lus10022140 [exp]	4.2	0.8874
AT1G05270			TraB family protein (.1)		Lus10015104 [exp]	4.2	0.8678
AT1G80950			Phospholipid/glycerol acyltran...		Lus10003950 [exp]	5.2	0.8418
AT4G28300			Protein of unknown function (D...		Lus10031645 [exp]	8.8	0.8659
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10001259 [exp]	12.0	0.8627
AT5G25265			unknown protein		Lus10005347 [exp]	13.9	0.8735
AT2G21190			ER lumen protein retaining rec...		Lus10012176 [exp]	17.7	0.8749
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10001519 [exp]	18.6	0.8740

Compare expression of checked genes

Lus10007433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.