Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59610 1088 / 0 DRP2B, CF1, ADL3 Dynamin related protein 2B, dynamin-like 3 (.1) AT1G10290 1081 / 0 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) AT3G60190 224 / 5e-63 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT1G14830 213 / 4e-59 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT2G44590 213 / 5e-59 ADL1D DYNAMIN-like 1D (.1.2.3) AT5G42080 201 / 5e-55 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT3G61760 201 / 7e-55 ADL1B DYNAMIN-like 1B (.1) AT4G33650 81 / 3e-15 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G14120 66 / 9e-11 DRP3B dynamin related protein (.1.2.3) AT1G60500 66 / 1e-10 DRP4C Dynamin related protein 4C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007887 [exp] 1055 / 0 AT1G59610 1337 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Lus10030357 [exp] 1051 / 0 AT1G59610 1337 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Lus10024461 [exp] 1043 / 0 AT1G10290 1068 / 0.0 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) Lus10024462 [exp] 239 / 4e-74 AT1G59610 217 / 1e-66 Dynamin related protein 2B, dynamin-like 3 (.1) Lus10019170 [exp] 214 / 3e-59 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10029001 [exp] 213 / 2e-58 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10040117 [exp] 211 / 3e-57 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10004007 [exp] 205 / 4e-56 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10019506 [exp] 194 / 3e-52 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G001400 [exp] 1181 / 0 AT1G10290 1253 / 0.0 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) Potri.004G228400 [exp] 1157 / 0 AT1G59610 1301 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Potri.019G068700 [exp] 1057 / 0 AT1G59610 1262 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Potri.010G105900 [exp] 214 / 2e-59 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.002G135100 [exp] 210 / 4e-58 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G171200 [exp] 208 / 2e-57 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G147500 [exp] 203 / 2e-55 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.014G043600 [exp] 197 / 2e-53 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G090600 [exp] 196 / 3e-53 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.003G141000 [exp] 190 / 3e-51 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10007434 pacid=23178395 polypeptide=Lus10007434 locus=Lus10007434.g ID=Lus10007434.BGIv1.0 annot-version=v1.0 ATGGAGGCGATTGAAGAATTGTCACAACTGTCAGACTCGATGCGGCAAGCATCCTCTGTGCTTGCTGACGAAGAAGTCGACGAGACGCCATCATCTTCCT CTTCCAGACGTCCTACTACTTTTCTCAACGTCGTCGCTCTTGGCAATGTTGGTTCTGGTAAATCCGCAGTGTTGAATAGTTTGATTGGCCATCCAGTTCT GCCAACAGGGGAAAATGGCGCTACCCGTGCTCCAATATGTATTGACTTGAGTAGGGATACTTCTGTAAACAGCAGATCGATTATTTTGCAAATCGACAAT AAAACTCAACAGGTTTCTGCAAGTGCTCTTCGGCGCTCTCTACAGGATAGACTAAGCAAGAGCTCTTCAGGCAGGAGTCGTGAGGAAATTTCTTTGAAGC TTCAAACTAGTACAGCTCCACCACTAAAATTGGTCGACTTGCCTGGACTGGACCAAAGAATCATGGATGATTCCCTGATTGGTGAGCATGTCCAACACAA CGATGCTATCTTGTTGGTGGTAATACCTGCTATTCAGGCACCTGAAATTTCATCATCCAGAGCACTCAGAGTTGCAAAGGAATACGATTCAGAGAGCACC AGAACGGTTGGTATTATCAGTAAAATTGATCAAGCAGCTACGGAGGGAAAAGCACTTGCAGCTGTTCAGGCACTCCTTATGAATCAAGGACCTCCTAAGA CATCCGATATTCCTTGGGTTGCTTTAATTGGTCAGTCTGTTTCTATAGCTTCAGCACAATCAGGAAGTGGTTCATCTGAGAATTCCCTAGAAACTGCTTG GCGAGCTGAGAGTGAAAGTCTAAGATCCATATTGACTGGAGCACCACAAAACAAACTTGGGAGAGTAGCCCTTGTGGAGGCCTTAGCTGGTCAGATCCGC AATCGTATGAAACTCAGACTTCCTAGTGTTCTCTCTGGGCTTCAGGGCAAGTCCCAAATTGTTCAGGATGAATTAGTTAGGCTTGGTGAACAAGGGGTGG GTAGTTCTGAAGGAACAAGAGCTCTAGCCTTGGAGCTTTGCCGTGAATTTGAGGAAAAATTTCTCCAGCACCTTGCTGGTGGTGAGGGTAATGGCTGGAA AGTTGTAGCAAGTTTCGAGGGAAATTTTCCAAACAGGATCAAACAGCTTCCCTTAGATAGGCATTTTGACATAAGCAATGTCAAAAAGGTTGTCCTAGAA GCAGATGGTTATCAGCCCTATCTAATATCTCCAGAGAAAGGGTTACGATCCTTGATAAAAGGTGTTCTAGAGTTGGCAAAAGAGCCCTCACGGTTATGCG TAGATGAGGTGCATAGGGTGCTTGTGGATCTAGTGTCTTCTGCTGCTAACGCGACACCAGGCCTTGGAAGATATCCTCCATTTAAGAGAGAGGTTGTGGC GATTGCAACTGCTGCATTGGAGGGATTCAAGAATGAAGCTAAAAAGATGGTGGTTGCTCTTGTGGACATGGAGCGTGCATTTGTTCCACCTCAACATTTT ATTCGATTAGTACAGAGAAGAATGGACAGGCAACGAAAGGAAGAAGAAGTAAAGAGCAAATCCTCTAAAAAAGCTATGGAGGCTGAACAATCCATACAGA ATAGGGCAACTAGTCCTCAGATGGGAGGCCAACAATCTGGAGGAACCTTGAAGTCTCTGAAGGAAAAATTCGGTCGGCAAGATAAAGAGCCACAGGAAGG ATCCACCTTGAAAACTGCTGGACCAGGTGGTGAAATAACAGCAGGTTCAGTACTGTTGCAGCTAGGGTACACCAAGAAACAAGAAGAACGACACTTCCGT GGTGTCATTACGTTGGAGGAATGTAGCATTGAGGATGTTGAAGAAGAAGAAGAGTCATCATCCAAGAGTTCCAAGGATAAAAAGTCTTCTGAAAAGGGAA CCCATCTCATTTTTAAAATTACCACTAGAGTTCCATACAAGACTGTCCTGAAAGAAATGCAAGTTAATAATCCAAGTTTGCCACTTTCAGCTCAGAGCAC TATCATGTTAAAAGCGGAGAGTGTGGCGGAGAAGGTTGAGTGGCTAAACAAACTGAGGACCGTTATCCAAGCCAAAGGAGGTCAAGTGACTGAACCTGGC CACCCTATGCGCCAGAGTTTATCAGATGGTTCACTTGATACTATGGTTCGAAGACCTGCAGACCCTGAAGAAGAGCTCCGGTGGATGTCACAAGAAGTGC GTGGCTATGTGGAAGCTGTTCTTAACAGTCTCGGAGCCAATGTCCCAAAAGCAGTTGTACTTTGTCAAGTTGAGAAAGCCAAGGAAAACATGCTCAACCA GCTGTATAGCTCCGTTAGTGCTCAAAGCTATGCAAAGATCGAGGAGCTGCTTCAAGAGGACCATAATGTAAAGCGCAAGCGGGAGCGTTCTCAGAAGCAG TCTTCTATACTTTCGAAACTCATTCGAAAGCTTAGCATCCATGATAACCGAGCAGCTGCTGCATCAGGTTGGTCTGATGATGGTGGATCAGAAAGCAGCT CCAGGAAAAGTGGATCATCGTCAGTGGGAGACGACTGGAGAACAGCGTTCGAGTCTGCAGGGAATGGCGGTGCGAGTGGGTGGTTTGGAGGATCATCAAG GTCGCACAGTAGAAGGAATAGTGATCCATCTCAGGATTGGGATGCAAGCTCAGGATCAAGCAACAGCAGCCGGCGGACACCAACTCGGATGCCACCTGCA CCGCCATCATCTGGTTCAACTTATAGATATTGA
AA sequence Show only first row Show all	>Lus10007434 pacid=23178395 polypeptide=Lus10007434 locus=Lus10007434.g ID=Lus10007434.BGIv1.0 annot-version=v1.0 MEAIEELSQLSDSMRQASSVLADEEVDETPSSSSSRRPTTFLNVVALGNVGSGKSAVLNSLIGHPVLPTGENGATRAPICIDLSRDTSVNSRSIILQIDN KTQQVSASALRRSLQDRLSKSSSGRSREEISLKLQTSTAPPLKLVDLPGLDQRIMDDSLIGEHVQHNDAILLVVIPAIQAPEISSSRALRVAKEYDSEST RTVGIISKIDQAATEGKALAAVQALLMNQGPPKTSDIPWVALIGQSVSIASAQSGSGSSENSLETAWRAESESLRSILTGAPQNKLGRVALVEALAGQIR NRMKLRLPSVLSGLQGKSQIVQDELVRLGEQGVGSSEGTRALALELCREFEEKFLQHLAGGEGNGWKVVASFEGNFPNRIKQLPLDRHFDISNVKKVVLE ADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLVDLVSSAANATPGLGRYPPFKREVVAIATAALEGFKNEAKKMVVALVDMERAFVPPQHF IRLVQRRMDRQRKEEEVKSKSSKKAMEAEQSIQNRATSPQMGGQQSGGTLKSLKEKFGRQDKEPQEGSTLKTAGPGGEITAGSVLLQLGYTKKQEERHFR GVITLEECSIEDVEEEEESSSKSSKDKKSSEKGTHLIFKITTRVPYKTVLKEMQVNNPSLPLSAQSTIMLKAESVAEKVEWLNKLRTVIQAKGGQVTEPG HPMRQSLSDGSLDTMVRRPADPEEELRWMSQEVRGYVEAVLNSLGANVPKAVVLCQVEKAKENMLNQLYSSVSAQSYAKIEELLQEDHNVKRKRERSQKQ SSILSKLIRKLSIHDNRAAAASGWSDDGGSESSSRKSGSSSVGDDWRTAFESAGNGGASGWFGGSSRSHSRRNSDPSQDWDASSGSSNSSRRTPTRMPPA PPSSGSTYRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007434 [exp]	0	1
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10018354 [exp]	2.4	0.8903
AT3G29180			Protein of unknown function (D...		Lus10037132 [exp]	4.4	0.8105
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10001979 [exp]	5.5	0.8561
					Lus10008674 [exp]	8.0	0.8572
AT1G29200			O-fucosyltransferase family pr...		Lus10029239 [exp]	9.4	0.8745
AT3G24715			Protein kinase superfamily pro...		Lus10025941 [exp]	9.9	0.8603
AT3G48770			DNA binding;ATP binding (.1)		Lus10004567 [exp]	11.0	0.8572
					Lus10019251 [exp]	11.0	0.7505
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	11.5	0.8465
AT1G20550			O-fucosyltransferase family pr...		Lus10014444 [exp]	12.0	0.8297

Compare expression of checked genes

Lus10007434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.