Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02570 365 / 2e-127 nucleic acid binding;RNA binding (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024458 [exp] 514 / 0 AT2G02570 416 / 1e-147 nucleic acid binding;RNA binding (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229200 [exp] 405 / 1e-143 AT2G02570 354 / 3e-123 nucleic acid binding;RNA binding (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF06003 [flax] [poplar] SMN Survival motor neuron protein (SMN)
Representative CDS sequence Show only first row Show all	>Lus10007436 pacid=23178401 polypeptide=Lus10007436 locus=Lus10007436.g ID=Lus10007436.BGIv1.0 annot-version=v1.0 ATGATGCAAGGGGAAGGCGAAGAGCTCAGCATCGAAGAGCTGACTTCCAATCTCTCTACTTACAGAGAACAGCTTGATACCGTCCATCAACTTTTGGCCG ATGAACCTGAGAATTCTGAATATGCAGACATGGAGAAGGAACTCCACGAGGTCATTGCATTGACAGAAGAACTCCTTGCAACTGCAAAGCAGCATGAGGT TCCTGGATCAGCTGTTGGTGCTGGAAGTAGTGTGTCTCCAACTTTTGGTCAATCTAAGGAACTAACTGACAACCCTGATCATCTTGAGAGGTTTCCCGTG GGCTCTAGAGTTCAAGCAGTCTATAGCGAGGATGGAGAATGGTATGATGGAACAGTTGAGGCTATCACTCCTAACGGCTATTATGTTGCTTATGATGGAT GGGGAAACAAAGAAGAGGTGGATCCTGACAATGTTAGACCAGTTGAGACCAATGCCTTAGTGGAGGCTGAAAGAGTAGCCGAAGCTACAAAACTGGCCAT CAAACGGAAAATTGCACAGGCTGGTTCAGTTGATTTTGAGTCACGTACTTTGCCAGCAAAGCTTCGTATAGAACCTGATGATCCTGAGGATGTGAAAGCT ACAAAGCGGAAGAAGATACATGCTTTTAAGTCAAAGATGAGGGTAGAAAAGCTTGAAGTTGCACAGAATAAGCGTCAGAATGCTTGGCAGCAGTTTCAGA CAACTAAAGGGAAGACAAAGAAGGTTGGTTTCTTCTCAGGCCGAAAACGAGAAAGCATATTTAAGTCGCCCGATGATCCTCATGGCAAGGTTGGTGTGAC GGGGAGTGGAAAAGGATTGACAGAGTTCCAGAAAAGGGAGAAGCATCTACATCTCAAGGGCGGAGCTGGAGAAACGGACGACTAG
AA sequence Show only first row Show all	>Lus10007436 pacid=23178401 polypeptide=Lus10007436 locus=Lus10007436.g ID=Lus10007436.BGIv1.0 annot-version=v1.0 MMQGEGEELSIEELTSNLSTYREQLDTVHQLLADEPENSEYADMEKELHEVIALTEELLATAKQHEVPGSAVGAGSSVSPTFGQSKELTDNPDHLERFPV GSRVQAVYSEDGEWYDGTVEAITPNGYYVAYDGWGNKEEVDPDNVRPVETNALVEAERVAEATKLAIKRKIAQAGSVDFESRTLPAKLRIEPDDPEDVKA TKRKKIHAFKSKMRVEKLEVAQNKRQNAWQQFQTTKGKTKKVGFFSGRKRESIFKSPDDPHGKVGVTGSGKGLTEFQKREKHLHLKGGAGETDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	0	1
AT5G03430			phosphoadenosine phosphosulfat...		Lus10026539 [exp]	2.0	0.8731
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	2.0	0.8828
					Lus10007667 [exp]	4.9	0.8718
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10035416 [exp]	5.7	0.8190
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022652 [exp]	5.7	0.8662
AT1G10890			unknown protein		Lus10043141 [exp]	6.5	0.8649
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10034734 [exp]	6.8	0.8286
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	8.0	0.8392
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042936 [exp]	8.7	0.8368
AT5G09225			unknown protein		Lus10020870 [exp]	8.9	0.8316

Compare expression of checked genes

Lus10007436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.