Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59740 808 / 0 Major facilitator superfamily protein (.1) AT1G33440 739 / 0 Major facilitator superfamily protein (.1) AT1G69850 384 / 5e-126 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT3G54140 382 / 2e-125 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G27040 374 / 1e-122 Major facilitator superfamily protein (.1.2) AT5G01180 361 / 3e-117 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 352 / 1e-113 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT2G26690 347 / 7e-112 Major facilitator superfamily protein (.1) AT5G62730 346 / 3e-111 Major facilitator superfamily protein (.1) AT1G12110 342 / 8e-110 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024457 [exp] 1155 / 0 AT1G59740 835 / 0.0 Major facilitator superfamily protein (.1) Lus10015240 [exp] 404 / 1e-133 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10033101 [exp] 397 / 3e-131 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10013276 [exp] 389 / 5e-128 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 387 / 5e-127 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10005417 [exp] 378 / 1e-123 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10037217 [exp] 374 / 4e-122 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10032876 [exp] 374 / 5e-122 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2) Lus10006477 [exp] 371 / 5e-121 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229000 [exp] 887 / 0 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 882 / 0 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 785 / 0 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1) Potri.004G064100 [exp] 398 / 2e-131 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.002G129500 [exp] 392 / 3e-129 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.014G036200 [exp] 390 / 2e-128 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.010G034300 [exp] 382 / 2e-125 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.003G111500 [exp] 370 / 2e-120 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.001G248600 [exp] 369 / 2e-120 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 367 / 9e-120 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10007437 pacid=23178415 polypeptide=Lus10007437 locus=Lus10007437.g ID=Lus10007437.BGIv1.0 annot-version=v1.0 ATGGAAATGGAGGGAAGGAGAGTTCATAATAATAAGGGTAGTAGTGGTGAGAGTAATAATATTGATCATGGAGAAGTAGTTGAGAGGAGTTATGTTGATT GGAGAGGCAGACCTTCCAACCCTCACAAGCATGGTGGAATGAGAGCTGCTTCATTTGTTCTTGGGTTACAAGCATTTGAGATAATGGGAATAGCAGCAGT AGGGAACAACCTAATAACATATGTGATGAATGAGATGCACTTCTCACTGTCAAAGTCAGCAAACATCGTCACTAACTTCGTTGGGACAATCTTTATCTTG GCACATGTTGGTGGCTACCTCTCTGACTCTTATCTTGGTTGTTTCTGGACCATGCTCATCTTTGGCTTTGTCGAGCTTTCTGGGTTCATATTGCTGTCAG TCCAAGCTCATGTTCCACAACTGAAGCCACCAAAGTGCAACCTGGAGGATGATGATAATTGTATGGAGGCAAAAGGGTTTAAGGCCTTAATCTTTTTTGT GGCCCTCTACTTAGTGGCATTAGGGAGTGGGTGTGTTAAACCAAACATGATTGCACATGGGGCAGACCAGTTCCATTTCCATCACAATAATCATAATCAT AACAATCAAGAAGAAGAAGAAGAAGAAGATGTAATTGCTAGTGGAAGAAGAAAGCAGGAGTCAAAGAAGCTGTCCACTTACTTCAACTCTGCCTATTTTG CATTCTCAATTGGTGAACTTATAGCTCTGACTCTCCTTGTGTGGGTCCAGACCCACTCTGGAATGGATGTTGGCTTTGGTGTCTCTGCTGCTGTTATGGC CATGGGTTTGATCTCCTTGGTCTCTGGCACTCTCTATTACAGGAACAAACCCCCTCAAGGCAGCATCTTTACTCCTATTGCTCAAGTATTTGTGGCTGCT TTCCTAAAGAGAAAGCAAATCAACCCATCCAACCCACATAACATACAACACTCCAGAAGCCAAATTCAGGAGCCACATACTCAAATCAATGCTGTGAAGA CACAAAGATTCAGGTTCTTGGACAAGGCATGCATTAAAGCTGAAGATGTGAGTGGTAATAGTGAGAGTCCATGGAGGTTGTGCAGTGTGAGTCAAGTGGA ACAGGTGAAGATACTGATATCAGTCCTACCAATATTTGCATGCACAATTGTGTTCAACACCATTCTAGCCCAACTCCAGACATTCTCAGTCCAACAAGGC AGAGCAATGAACACAAAACTTGGACATAACTTTGAAATCCCTCCAGCTTCCCTCCAAGCCATCCCTTACATCATCCTCATTGTTTTGGTCCCACTCTATG ACGCTTTCTTCGTCCCCATGGCAAGGAAGTACACAGGCCACGAATCCGGGATCACTCCTTTGCAACGAATAGGCTCCGGTCTGTTCCTCGCCACCTTCTC CATGGTCTCAGCTGCCGTCATGGAGAAGAAGAGAAGGGATCATGCAGAAGCCAGTGATGATCCAAACAACAAGCTGTCCATATTCTGGATCACACCACAG TTCCTTATATTTGGGTTGTCAGAGATGCTGACTGCCGTTGGTTTAATTGAGTTCTTTTACAAACAGTCTTTGAAAGGGATGCAAGCATTCTTGACAGCAA TCACTTACTGCTCATATTCATTTGGGTTCTACCTGAGCTCCATATTGGTGTCTCTGGTCAACAAAGTTACCTCAGATTCGTCACACCATGGTTGGCTGAG TGACAACGATCTGAACAAAGATAGGCTGGATCTTTTCTATTGGATGCTGGCAGTTCTGAGCTGCGTAAACTTTTTCAACTATCTGTTTTGGTCCAAGTGG TATCATCCTCCTTCCACATCTGAGGTCAACTTCCACCTAACTTTCAACTCTTCAAAAGCCATTGGAGATGAAGATATAGCATAA
AA sequence Show only first row Show all	>Lus10007437 pacid=23178415 polypeptide=Lus10007437 locus=Lus10007437.g ID=Lus10007437.BGIv1.0 annot-version=v1.0 MEMEGRRVHNNKGSSGESNNIDHGEVVERSYVDWRGRPSNPHKHGGMRAASFVLGLQAFEIMGIAAVGNNLITYVMNEMHFSLSKSANIVTNFVGTIFIL AHVGGYLSDSYLGCFWTMLIFGFVELSGFILLSVQAHVPQLKPPKCNLEDDDNCMEAKGFKALIFFVALYLVALGSGCVKPNMIAHGADQFHFHHNNHNH NNQEEEEEEDVIASGRRKQESKKLSTYFNSAYFAFSIGELIALTLLVWVQTHSGMDVGFGVSAAVMAMGLISLVSGTLYYRNKPPQGSIFTPIAQVFVAA FLKRKQINPSNPHNIQHSRSQIQEPHTQINAVKTQRFRFLDKACIKAEDVSGNSESPWRLCSVSQVEQVKILISVLPIFACTIVFNTILAQLQTFSVQQG RAMNTKLGHNFEIPPASLQAIPYIILIVLVPLYDAFFVPMARKYTGHESGITPLQRIGSGLFLATFSMVSAAVMEKKRRDHAEASDDPNNKLSIFWITPQ FLIFGLSEMLTAVGLIEFFYKQSLKGMQAFLTAITYCSYSFGFYLSSILVSLVNKVTSDSSHHGWLSDNDLNKDRLDLFYWMLAVLSCVNFFNYLFWSKW YHPPSTSEVNFHLTFNSSKAIGDEDIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59740			Major facilitator superfamily ...		Lus10007437 [exp]	0	1
AT1G59740			Major facilitator superfamily ...		Lus10024457 [exp]	1.0	0.9458
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035359 [exp]	4.2	0.8764
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10016815 [exp]	7.1	0.8793
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	9.8	0.8748
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10013185 [exp]	13.7	0.8528
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Lus10031259 [exp]	15.5	0.8446
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10005317 [exp]	15.5	0.8664
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10006369 [exp]	15.9	0.8413
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10022203 [exp]	20.7	0.8680
AT1G68620			alpha/beta-Hydrolases superfam...		Lus10041473 [exp]	30.9	0.8370

Compare expression of checked genes

Lus10007437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.