Plant FIBer expression Database

Lus10007438 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49880 316 / 9e-105 mitotic checkpoint family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024456
[exp]
280 / 2e-90 AT5G49880 508 / 2e-170 mitotic checkpoint family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G000900
[exp]
334 / 8e-112 AT5G49880 829 / 0.0 mitotic checkpoint family protein (.1)
Potri.004G228900
[exp]
316 / 2e-105 AT5G49880 682 / 0.0 mitotic checkpoint family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05557 MAD Mitotic checkpoint protein
Representative CDS sequence
>Lus10007438 pacid=23178412 polypeptide=Lus10007438 locus=Lus10007438.g ID=Lus10007438.BGIv1.0 annot-version=v1.0
ATGGTTAACACTCTTGCAGTTGATAATGATGTCAAACAAACCATAGAGGCTTTGCAGAGTGAGTTGCAGAAGACGAAAGAAAAGTTGCAAGCACTTGAAG
AGTTGAAGAGTCAGCCTGGTGATGCTGGCAAGCTGGTAGACTCATACATATCTGGCAAGGTGACACAGTTAAAAGAACAAATTGCAACACTTGAAAAACG
AGAAGAAAGATACAGAACAGTTTTTGCTGATAGAATCTCGGTCTTTAGGAGGGCTTGTTGTGAACTTTTTGGCTACAAGATAGTGATGGATGAACGCCAG
CGTCCAAATGGGATTCCAGTTACTCGGTTTACCCTTCAGTCCATATATGCACAGAGTGAAGATGAAAAGCTTGAATTTGAATATGAATCAGGGAATACAA
ATATTGTGGCAAATGAGTACACCTCAGTGTCTGAAATTTCTCGGCAGGTTGAAACATTCATCCGCAAGATGAATTCGATTCCTGCTTTCACAGCCAATTT
AACAGTGGAGTCTTTCAACAGACGAACATTATCTTAG
AA sequence
>Lus10007438 pacid=23178412 polypeptide=Lus10007438 locus=Lus10007438.g ID=Lus10007438.BGIv1.0 annot-version=v1.0
MVNTLAVDNDVKQTIEALQSELQKTKEKLQALEELKSQPGDAGKLVDSYISGKVTQLKEQIATLEKREERYRTVFADRISVFRRACCELFGYKIVMDERQ
RPNGIPVTRFTLQSIYAQSEDEKLEFEYESGNTNIVANEYTSVSEISRQVETFIRKMNSIPAFTANLTVESFNRRTLS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G49880 mitotic checkpoint family prot... Lus10007438
[exp]
0 1
AT1G36050 Endoplasmic reticulum vesicle ... Lus10003406
[exp]
5.5 0.8774
AT4G11640 ATSR serine racemase (.1) Lus10008490
[exp]
11.1 0.8758
AT1G18260 HRD3A, EBS5 EMS-mutagenized bri1 suppresso... Lus10009047
[exp]
18.7 0.8727
AT1G04590 EMB2748 unknown protein Lus10019008
[exp]
20.7 0.8675
AT3G52640 Zn-dependent exopeptidases sup... Lus10007387
[exp]
23.3 0.8673
AT1G19100 Histidine kinase-, DNA gyrase ... Lus10039959
[exp]
24.5 0.8635
AT4G24940 ATSAE1A, AT-SAE... SUMO-activating enzyme 1A (.1) Lus10008977
[exp]
24.9 0.8625
AT5G14590 Isocitrate/isopropylmalate deh... Lus10013090
[exp]
27.1 0.8653
AT3G48470 EMB2423 embryo defective 2423 (.1) Lus10001100
[exp]
27.4 0.8584
AT3G54170 ATFIP37 FKBP12 interacting protein 37 ... Lus10018090
[exp]
47.2 0.8625

Lus10007438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.