Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49880 185 / 1e-52 mitotic checkpoint family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024456 [exp] 239 / 1e-72 AT5G49880 508 / 2e-170 mitotic checkpoint family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G000900 [exp] 232 / 3e-70 AT5G49880 829 / 0.0 mitotic checkpoint family protein (.1) Potri.004G228900 [exp] 187 / 9e-54 AT5G49880 682 / 0.0 mitotic checkpoint family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05557 [flax] [poplar] MAD Mitotic checkpoint protein
Representative CDS sequence Show only first row Show all	>Lus10007439 pacid=23178407 polypeptide=Lus10007439 locus=Lus10007439.g ID=Lus10007439.BGIv1.0 annot-version=v1.0 ATGAAGATCCTCCTACTGATAATCGGGATTCCCCCCATCAACACTCTGAGCACATGCTCTGCACCTACCAGTGCCGTCAAATGGTTCGCTCCTTGCACCG TCTTTTCCGTTAAAGCAGATTTTCTGGATGCTTTGAGCAATGCGGAAAAGCAAGTTCAGGACTATCAGTCTCAACTGGCTGGATTGAGTGAAAATTTTCT GAAAGCAGGGAGAAGCTATCATATGCAGAACAGGAACTTGCAGCTGCAACAGGGCGAGAAATCATTTCATGACCAACTACTAAAGGAAGTTAATGAGTCC CATGGCCGGTTGAAAAAACAATTAGAATTAACCATCAAACTTGAGCTGAAACGAGATACCAAGTTTTCCACTTCAAAGATTGCTGGTGATCTTGAGAAAA TGGAATTCAGAGCTAGAAGTGCTGAGGAAGAAGTGGAACTACTGAGAAAGCAGCAGGAAGAACTGCAATCCAAATTTTCTGAGTGCTTGCACCAGAAGAG TGAATTAGAGGTAAAAATATCAAGCCTCTCATATGAATCTGGTTCTCCTAAAGAGAGTGATATATTGGTTAAGCATCTACAAGAAGAGCTTCGGAACTAT GAGTCAGAGAGCCGCAGAGAGAGGGCAGAGTTACAACTCTCGAAGCTACAAGAGTATGAGGTTAAGATGACAAAATTGGAGGATGATTTATCTGCTTGGA AGCTTATGATTCAGAACATCCCTGACGTTTCATGCTGTGATGATGTACCTTTGAAAGTTTCAGCTTTACAGAGAGAGGTGATCGATAACAGGAAGAAGTT GGGTGAGGTGAGTGCTCAATTGAAACAAGAGAAGGTGATTCTGGACACAACCCAACTTGATAAACAAAAAACTGAAACAGAGGCTGCATTGGCTAAAGAA GAAGTTGGTCGATTGGAAGCAGAGGTTAAGAGGATCAGTTTGATGGTAAGCTTAGTTTCAGTCTTACATCGAAGAATTAGAAAGAGATTTAGATGCACAA AAGGAGATCCACTACCATCAACGGGATGA
AA sequence Show only first row Show all	>Lus10007439 pacid=23178407 polypeptide=Lus10007439 locus=Lus10007439.g ID=Lus10007439.BGIv1.0 annot-version=v1.0 MKILLLIIGIPPINTLSTCSAPTSAVKWFAPCTVFSVKADFLDALSNAEKQVQDYQSQLAGLSENFLKAGRSYHMQNRNLQLQQGEKSFHDQLLKEVNES HGRLKKQLELTIKLELKRDTKFSTSKIAGDLEKMEFRARSAEEEVELLRKQQEELQSKFSECLHQKSELEVKISSLSYESGSPKESDILVKHLQEELRNY ESESRRERAELQLSKLQEYEVKMTKLEDDLSAWKLMIQNIPDVSCCDDVPLKVSALQREVIDNRKKLGEVSAQLKQEKVILDTTQLDKQKTETEAALAKE EVGRLEAEVKRISLMVSLVSVLHRRIRKRFRCTKGDPLPSTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49880			mitotic checkpoint family prot...		Lus10007439 [exp]	0	1
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	1.4	0.9307
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	6.7	0.8922
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	6.8	0.8942
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10007489 [exp]	7.4	0.8741
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10006218 [exp]	8.9	0.8327
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	9.4	0.8882
AT3G13225			WW domain-containing protein (...		Lus10005845 [exp]	11.0	0.8818
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	12.5	0.8846
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	12.8	0.8865
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10037903 [exp]	13.4	0.8725

Compare expression of checked genes

Lus10007439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.