Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59750 849 / 0 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT3G61830 559 / 0 ARF ARF18 auxin response factor 18 (.1) AT4G23980 538 / 0 ARF ARF9 auxin response factor 9 (.1.2) AT5G62000 526 / 4e-177 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT2G46530 478 / 1e-161 ARF ARF11 auxin response factor 11 (.1.2.3) AT1G34410 437 / 1e-145 ARF ARF21 auxin response factor 21 (.1) AT1G35520 426 / 2e-141 ARF ARF15 auxin response factor 15 (.1) AT1G34310 425 / 6e-141 ARF ARF12 auxin response factor 12 (.1) AT1G35240 422 / 4e-140 ARF ARF20 auxin response factor 20 (.1) AT1G34390 421 / 2e-139 ARF ARF22 auxin response factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024455 [exp] 1251 / 0 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10032541 [exp] 516 / 4e-173 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10043200 [exp] 515 / 1e-172 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10023058 [exp] 499 / 6e-169 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10032413 [exp] 429 / 3e-146 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10010969 [exp] 365 / 2e-115 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 364 / 3e-115 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10033598 [exp] 360 / 1e-113 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 362 / 2e-113 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228800 [exp] 974 / 0 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G001000 [exp] 961 / 0 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G142100 [exp] 578 / 0 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.001G088600 [exp] 568 / 0 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.012G106100 [exp] 509 / 1e-170 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 501 / 2e-167 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.014G100100 [exp] 496 / 2e-167 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.003G163600 [exp] 484 / 1e-161 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.002G172800 [exp] 474 / 1e-158 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2) Potri.001G066200 [exp] 459 / 1e-151 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10007440 pacid=23178417 polypeptide=Lus10007440 locus=Lus10007440.g ID=Lus10007440.BGIv1.0 annot-version=v1.0 ATGGCATTCACTGTTACAAGTCATTCATCGGGAGCACACCTCCATCCAGGGGCCTGCAATGATGCTCTATACAAGGAGCTTTGGCATGCATGTGCTGGAC CTCTTGTTACCCTTCCCCGGGAAGGGGAAAGAGTGTACTATTTCCCACAAGGTCATATGGAACAGCTTGAAGCTTCGATGCAGCAGGGAGTAGAACATCA AATGCCCATGTTCAATCTTCCATCTAAGATTCTTTGTAAAGTTGTTAATGTACAGCGCAAGGCTGAAGCTGATACTGATGAAGTTTATGCTCAAGTTACT CTGCTTCCAGAACCAGATCAAAGCGAGATAACCAGCCCTGATACGCCCCTACCTGAACCTGAGAGATGTACGGTCCATTCTTTTTGCAAGACACTTACAG CTTCAGACACTAGCACCCATGGTGGTTTCTCTGTTCTTCGAAGGCATGCAGATGATTGTCTACCTCCGCTGGATATGTCCCAGCAGCCACCTTGGCAGGA ACTGGTAGCAACAGATCTTCATGGTAATGAATGGCATTTCCGTCACATTTTTCGAGGTCAACCAAGGCGCCATTTACTAACGACTGGATGGAGTGTTTTT GTTAGTTCAAAAAAGTTAGTTGCAGGGGATGCCTTCATCTTCTTGAGGGGAGAAAGTGGAGAGCTTCGTGTTGGTGTTAGGAGGCATATGAGACAACAGA CCAACATGCCATCTTCTGTCATATCTAGTCAAAGTATGCACCTCGGTGTTCTTGCCACTGCTTCTCATGCGATTGCAACTGGAACTCTTTTCTCTGTCTT CTACAAGCCAAGAACAAGTCGGTCTGAGTTCATTGTAAGTGTCAACAAGTACCTTGAAGCCGTAAATCACAAGCTGTCTGTTGGAATGAGGTTTAAGATG AGATTTGAGGGCGAGGAAGTTCCGGAACGAAGGTTCAGTGGCACAATTGTTGGAGTTGGGGACGATTTATCGTCTGGATGGTCTGATTCCGATTGGAGAT CGTTAAAGGTACAATGGGATGAGCCAACTTCAATTTGGCGTCCTGATAGAGTGTCCTCTTGGGAATTGGAACCACTTATAGCGACCACTCCTTCAAACTC TCAACCAATGAACCGGAATAACAAGCGGGTGCGACCATCAGTCATACCTTCGCCGAGTCCTGATCTCAATGGCATGTGGAAGGCACCGGTTGATTCCTCC GGTCACTCACAAGTTGATTCACGGCGTGGATGTCTGTATCCATCACCTACTTATCCTGCAAAAACGAAGGCCAGCTCTCTTGGGTTCAGTGGAAATAGTC CGTTATCTGCAGTTTCAACCAATCCTTCAATGTATTGGCCAAAACAGGTGGAAGGTGTGACAGAATCCCTTTCTCCAGCCGTTAACAGAAGTGTTGGGGA CATGAAACAGGGCACAGGAAATGGCTATAGGCTGTTTGGCATTCAACTTGTTGATAACTCCAATATGGAAGAAACATCCGGTGCTGTTTCACAACCTGTA AGGGTCGATTGCCCAATTTTGTCAGTAGATGCCGAGTCTGATCAGCAGTCCGAGCCATCAAATGTCTTTCGATGTGAAATTGCCTCTGCAAGCTATGATC CTGAGAAATCAAGTTTGCGATCTCCCCAGGAGCTGCATAGCAGGCAAGTTAGGAGCTGCACAAAGGTTCATATGCAAGGGATTGCTGTTGGAAGGGCAGT TGATTTGACACGGTTTGAGTGCTATGATGACCTGTTAAGGAAACTGGAGGATATGTTTGACATTCAAGGTGAACTTAGAGGCTGCACTAAGAAATGGCAG GTTGTGTACACCGACGATGAAGATGACATGATGATGGTCGGGGATGATCCATGGCATGAGTTCTGTAGCATGGTGAGGAAAATCTTCATCTACACATCTG AGGAAGTGAAGAAGATGTCAGCTAAGGTAAAACTACCAGTCCGGGAAGATATGAAAACAGGCAGTGGCTGTGATGTGGATGTGGATGGAGCAGCAGCAGC AGCAGCAGCTAACATGGAGGATCAATCATCCATTATTGGGTCGGAAAGCTGA
AA sequence Show only first row Show all	>Lus10007440 pacid=23178417 polypeptide=Lus10007440 locus=Lus10007440.g ID=Lus10007440.BGIv1.0 annot-version=v1.0 MAFTVTSHSSGAHLHPGACNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMQQGVEHQMPMFNLPSKILCKVVNVQRKAEADTDEVYAQVT LLPEPDQSEITSPDTPLPEPERCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVF VSSKKLVAGDAFIFLRGESGELRVGVRRHMRQQTNMPSSVISSQSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAVNHKLSVGMRFKM RFEGEEVPERRFSGTIVGVGDDLSSGWSDSDWRSLKVQWDEPTSIWRPDRVSSWELEPLIATTPSNSQPMNRNNKRVRPSVIPSPSPDLNGMWKAPVDSS GHSQVDSRRGCLYPSPTYPAKTKASSLGFSGNSPLSAVSTNPSMYWPKQVEGVTESLSPAVNRSVGDMKQGTGNGYRLFGIQLVDNSNMEETSGAVSQPV RVDCPILSVDAESDQQSEPSNVFRCEIASASYDPEKSSLRSPQELHSRQVRSCTKVHMQGIAVGRAVDLTRFECYDDLLRKLEDMFDIQGELRGCTKKWQ VVYTDDEDDMMMVGDDPWHEFCSMVRKIFIYTSEEVKKMSAKVKLPVREDMKTGSGCDVDVDGAAAAAAANMEDQSSIIGSES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10007440 [exp]	0	1
AT1G65440		GTB1	global transcription factor gr...		Lus10003130 [exp]	5.0	0.8567
AT3G22790			Kinase interacting (KIP1-like)...		Lus10006606 [exp]	12.5	0.8252
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10008091 [exp]	18.4	0.7794
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10002076 [exp]	28.6	0.7948
AT4G11450			Protein of unknown function (D...		Lus10002006 [exp]	30.6	0.7799
AT3G45190			SIT4 phosphatase-associated fa...		Lus10016088 [exp]	40.9	0.7833
AT3G46920			Protein kinase superfamily pro...		Lus10019577 [exp]	45.8	0.7768
AT3G13980			unknown protein		Lus10008457 [exp]	46.7	0.7263
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10038353 [exp]	67.9	0.7743
AT1G69420			DHHC-type zinc finger family p...		Lus10037133 [exp]	83.5	0.7495

Compare expression of checked genes

Lus10007440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.