Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59760 1438 / 0 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT2G06990 784 / 0 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G46960 254 / 1e-69 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G70070 184 / 2e-47 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) AT2G42270 66 / 1e-10 U5 small nuclear ribonucleoprotein helicase (.1) AT1G20960 64 / 5e-10 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT5G61140 64 / 6e-10 U5 small nuclear ribonucleoprotein helicase (.1.2) AT3G27730 56 / 2e-07 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024454 [exp] 1058 / 0 AT1G59760 1557 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10027599 [exp] 790 / 0 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022944 [exp] 422 / 6e-138 AT2G06990 713 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022945 [exp] 368 / 3e-116 AT2G06990 887 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10017528 [exp] 245 / 7e-67 AT3G46960 1971 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10013294 [exp] 174 / 4e-44 AT1G70070 1372 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10030818 [exp] 137 / 1e-32 AT1G70070 1389 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10016048 [exp] 66 / 2e-10 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10040524 [exp] 66 / 2e-10 AT5G61140 3299 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228700 [exp] 1557 / 0 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.006G078000 [exp] 791 / 0 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G146001 [exp] 521 / 7e-175 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.009G041200 [exp] 244 / 1e-66 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.010G038500 [exp] 174 / 3e-44 AT1G70070 1502 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Potri.015G095500 [exp] 67 / 1e-10 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 66 / 1e-10 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.015G056501 [exp] 66 / 2e-10 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.001G348200 [exp] 58 / 3e-08 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08148 [flax] [poplar] DSHCT DSHCT (NUC185) domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10007442 pacid=23178408 polypeptide=Lus10007442 locus=Lus10007442.g ID=Lus10007442.BGIv1.0 annot-version=v1.0 ATGGGGTCAGTGAAGAGAAAGTCTGTTGAGGATCCAGCTGGGGAGACTCTACCTCCACAGAAACAGCATAGAGAGAATGGTTCAGCAGTCCCCATTGGAC AAGTAGCTTGTGTTCATGATGTCTCCTACCCTGAAGGCTACTTATATCCTCCTCTTTCCGGTCCTACAAGTCAGAAGCCAGCAAAAGAGTTCCCCTTCGC ACTTGATCCTTTCCAGTCGGAGGCTATCAAGTGCCTTGACAATGGAGAGTCTGTTATGGTGTCGGCACATACATCAGCTGGAAAAACTGTGGTCGCCTTA TATGCTATTGCTATGTCTCTGAGGAACAAACAAAGGGTCATATATACCTCACCCATTAAGGCACTCAGCAATCAAAAGTATAGGGAGTTCAAGGAAGAGT TCTCTGATGTTGGTCTGATGACAGGAGATGTCACTATCGATCCTAATGCTTCTTGTTTGGTAATGACGACAGAAATCTGGCGTAGCATGCAGTACAGAGG GTCAGAAGTCACACGAGAAGTGGCATGGGTAATTTTTGACGAAGTGCACTACATGCGTGATCGAGAAAGAGGGGTAGTTTGGGAGGAAAGCATTGTTATG GCCCCAAAAAACTCTCGCTTTGTTTTCCTCTCTGCAACTGTACCTAATGCAAAAGAATTTGCTGATTGGGTTGCCAAGGTCCACAAACAACCATGTCACA TCGTGTATACTGACTACCGACCAACACCACTTCAACATTATCTTTTTCCTGCTGGTTGTGATGGCTTGTACTTGGTGGTGGATGAGAAGGGAAAATTTAG AGAGGGAAGCTTTCAGAAAGCGCTAAACGCTTTGGTTCCTAAAGGTGAACAAGAGAAAAAAAAGGAAAATGGGAAGTGGCAAAAGGGGTTGGTGGTTGGT AAGCTTGGTGAAGAAAGTGACATTTTTAAGATGGTAAAGATGATCATTCAGCGGCAGTATGATCCTGTAATTCTTTTCTCCTTCAGCAAAAGAGAATGTG AATTTCTAGCTATGCAGATGGCAAAGATGGATCTAAATGATGATGATGAGAAAGCAAACATTGAAAACATCTTTTGGAGTGCCATGGACATGCTTTCAGA CGATGACAAAAAACTACCACAGGCAAGTTTCAAACATGTTACCTCTCTTAAAGCGGGGCATAGGTGTGCATCATTCTGGATTGCTTCCTATTCTGAAGGA AGTTATAGAGATTCTGTTTCAGGAAGGGCTGATCAAGAAACCTTCAGTATTGGTTTAAACATGCCTGCCAAAACTGTGGTGTTTACAAATGTCCGGAAGT TTGATGGGGACAAGTTTAGATGGCTATCTAGTGGTGAGTATATACAAATGAGTGGGCGTGCTGGTCGTCGAGGTATTGATGACCGTGGAGTATGTATCCT TATGTTGGACGAGAAGCTCGAGCCATCTACTGCAAAAACAATGGTTAAAGGAAGTGCTGACTGTTTGAACAGTGCGTTCCATCTAAGCTACAACATGCTT CTGAATCAACTGCGCTGTGAAGAAGGAAATCCTGAAAATCTACTTCGCAATTCTTTCTATCAGTTCCAAGCAGACCGTGCCATTCCTGATTTAGAGAAAC AAGTGAAACTCCTCGAGGAAGAGAGGGATTCAATTGTTATAGAAGAAGAAGATAGCCTCAAGAACTATTATCATATGATTCTTCAATACAGAAGCTTGAA GAAGGATGCTCGTGATATTGTGTTTTCCCCTAAACACTGTTTGCCATATCTTCAATCTGGAAGGCTGGTCTGCATTGAGTGCTCTGGAACTGATGGAAAC TCATCTTCTTTCTCAATGGCGGACCAAGTTGCATGGGGTGTAATAATCAATTTTGAAAGAGTGAAAAATGTTTCTGAAGATGACGCTAATAAGAAACCAG AACATGCTAGCTACACAGTTGATGTACTTACAAGATGTTTAGTAAACAAAGAGGGTGCTGCGAAAAAGATGATAAAGATTATTCCGTTGAGAGAAAGTGG AGAAGCTTTAGTTATTTCTGTGCCTATCTCCCAGATTATTAGCTTGAGTAGTGCCCGTTTGTATCTGTCGAAAGATCTTTTGCCATCAGAAATTCGGGTG AATACTCTGAAGCAGGTTGGAGAATTTCTATCTAGAAACCCTAGTGGATTGCCTCTAGATCCTGAAGGGGATATGAAGATTCAAAGCAGCTCATACAAGA AGGCAGTCAGACGTATAGAGGCTCTAGAGCACCTATTTAAGAAGCATAATATTGCGAAGTCCCCACTTATTGAGCAGAAACTCAAGGTATTACACAACAA GCAAGAATTGACAGCAAAGATCAAGTCTATCAGGAGACAAATGCGTACTTCGACTTCCTTGGCATTTAAAGATGAACTTAAAGCTCGAAGGCGGGTTCTC CGTAGACTGGGGTATATTACCAGTGATGATGTGGTAGAGTTGAAAGGAAAGGTTGCTTGTGAAATTAGTAGTGCAGATGAGTTAACATTAACAGAACTGA TGTTCAATGGGGTTTTAAAGGATGCCAGAGTTGAAGAGGTGGTAGCTCTTCTCTCTTGCTTTGTGTGGCAAGAGAAGCTACAAGATGCTGCAAAACCAAG GGAGGAACTCGACTTGCTCTTTATGCAATTGCAGGATACAGCTCGAAGAGTTGCCAAACTACAGCTTGAATGCAAGGTGCAAATTGACGTAGAAAATTTT GTGGGTTCGTTCAGGCCTGATATAATGGAGGCTGTTTATGCTTGGGCCAAAGGCTCCAAGTTCTACGAGATCATGGAGATCACACAGGTCTTTGAGGGTA GTTTGATCAGAGCTATTAGGAGACTAGAGGAAGTGCTTCAGCAGCTTATAGAAGCAGCAAAATCCATCGGTGAAATAGAACTAGAGGCCAAATTCGAAGA AGCTGTTTCAAAAATCAAGAGAGACATTGTATTTGCGGCATCTCTATACTTATAG
AA sequence Show only first row Show all	>Lus10007442 pacid=23178408 polypeptide=Lus10007442 locus=Lus10007442.g ID=Lus10007442.BGIv1.0 annot-version=v1.0 MGSVKRKSVEDPAGETLPPQKQHRENGSAVPIGQVACVHDVSYPEGYLYPPLSGPTSQKPAKEFPFALDPFQSEAIKCLDNGESVMVSAHTSAGKTVVAL YAIAMSLRNKQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYRGSEVTREVAWVIFDEVHYMRDRERGVVWEESIVM APKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIVYTDYRPTPLQHYLFPAGCDGLYLVVDEKGKFREGSFQKALNALVPKGEQEKKKENGKWQKGLVVG KLGEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNDDDEKANIENIFWSAMDMLSDDDKKLPQASFKHVTSLKAGHRCASFWIASYSEG SYRDSVSGRADQETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDDRGVCILMLDEKLEPSTAKTMVKGSADCLNSAFHLSYNML LNQLRCEEGNPENLLRNSFYQFQADRAIPDLEKQVKLLEEERDSIVIEEEDSLKNYYHMILQYRSLKKDARDIVFSPKHCLPYLQSGRLVCIECSGTDGN SSSFSMADQVAWGVIINFERVKNVSEDDANKKPEHASYTVDVLTRCLVNKEGAAKKMIKIIPLRESGEALVISVPISQIISLSSARLYLSKDLLPSEIRV NTLKQVGEFLSRNPSGLPLDPEGDMKIQSSSYKKAVRRIEALEHLFKKHNIAKSPLIEQKLKVLHNKQELTAKIKSIRRQMRTSTSLAFKDELKARRRVL RRLGYITSDDVVELKGKVACEISSADELTLTELMFNGVLKDARVEEVVALLSCFVWQEKLQDAAKPREELDLLFMQLQDTARRVAKLQLECKVQIDVENF VGSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIEAAKSIGEIELEAKFEEAVSKIKRDIVFAASLYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	0	1
AT4G30990			ARM repeat superfamily protein...		Lus10042447 [exp]	1.4	0.9391
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	1.4	0.9374
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	2.4	0.9293
AT1G42440			unknown protein		Lus10013232 [exp]	3.2	0.9203
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	4.2	0.9202
AT4G10320			tRNA synthetase class I (I, L,...		Lus10024041 [exp]	4.5	0.9244
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002097 [exp]	6.9	0.9182
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	7.3	0.9172
AT5G07940			unknown protein		Lus10021621 [exp]	7.4	0.9094
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10014662 [exp]	7.5	0.8794

Compare expression of checked genes

Lus10007442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.