Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10870 310 / 1e-106 ATCM2 chorismate mutase 2 (.1) AT1G69370 248 / 2e-81 CM-3, CM3 chorismate mutase 3 (.1) AT3G29200 239 / 7e-78 ATCM1, CM1 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032998 [exp] 236 / 1e-76 AT3G29200 359 / 2e-124 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Lus10015378 [exp] 247 / 2e-76 AT3G29185 474 / 2e-162 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2) Lus10019795 [exp] 213 / 4e-69 AT3G29200 288 / 3e-98 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Lus10014114 [exp] 136 / 2e-39 AT1G69370 199 / 7e-64 chorismate mutase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G019250 [exp] 327 / 7e-113 AT5G10870 303 / 1e-103 chorismate mutase 2 (.1) Potri.017G088700 [exp] 254 / 1e-83 AT3G29200 352 / 2e-121 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Potri.010G162300 [exp] 246 / 8e-81 AT1G69370 370 / 6e-129 chorismate mutase 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007444 pacid=23178413 polypeptide=Lus10007444 locus=Lus10007444.g ID=Lus10007444.BGIv1.0 annot-version=v1.0 ATGTGGAGCTGTTTTGGTCTGATGCTGTTTTCTTTAATGGCTTCTAGTAGGAGATACATGATGGCTGTAGCGGAAGAAAGCACTTCTTCTGCAGCTCCGG TTACCCTGGACACCGTGAGACAGTTTTTGACCGGCCAAGAAGACACAATTGTCTACAGATTGATAGACAGAGCCAAGTTCCCTCTGAATTCCCCAATCTA CAATGACACCTTTGAGTTGTCACCTGGATCTTCTGCCACTTTGATCCAATTTGTCGTCAGAGAAACAGAAATTCTTCAAGCCAAGGCTGGGAGGTACCTT GATCCTGAAGAAAACCCTTTCTTTCCTGATAACCTTCCATCGCCAATCACACCACTTCACCAAAAATATCCTGAGTTCCTGCATCCACCGGCAGCTTCTG TTAACGTGAACCAGATGATATGGGATTTCTATTTCGACCAATTCCTTCCAACCTTAGTTGCTCCAGGTGATGATGGTCACTATGCAGCTACTTCTGCCAG TGACACCGACTGTTTACAGGCACTCTCTAAAAGGATTCATTATGGTAAGTACGTGGCTGAAGTTAAATACCGCGAAGCACCCCATGAATACGAGCCTCTG ATCCGCTCAAAGGACAGCGAAGGTCTGATGAACTTGTTGACATTCAAGAAGCAAGAAGACATGGTGATGAAGAGGGTTGAGAAGAAAGGTATGGTGTTCG GACAATTCGTGAGCCTGAATGACACAGCAGAAAACAGTGGCAAGTACAAGATTGATCCATCTCTCGTGTCTCAACTCTACGAGAAATGGGTGATTCCTCT AACCAAGCGCGTAGAAGTCGACTATCTGCTCAAGAGATTGGACTGA
AA sequence Show only first row Show all	>Lus10007444 pacid=23178413 polypeptide=Lus10007444 locus=Lus10007444.g ID=Lus10007444.BGIv1.0 annot-version=v1.0 MWSCFGLMLFSLMASSRRYMMAVAEESTSSAAPVTLDTVRQFLTGQEDTIVYRLIDRAKFPLNSPIYNDTFELSPGSSATLIQFVVRETEILQAKAGRYL DPEENPFFPDNLPSPITPLHQKYPEFLHPPAASVNVNQMIWDFYFDQFLPTLVAPGDDGHYAATSASDTDCLQALSKRIHYGKYVAEVKYREAPHEYEPL IRSKDSEGLMNLLTFKKQEDMVMKRVEKKGMVFGQFVSLNDTAENSGKYKIDPSLVSQLYEKWVIPLTKRVEVDYLLKRLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10870		ATCM2	chorismate mutase 2 (.1)		Lus10007444 [exp]	0	1
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10017137 [exp]	1.7	0.7729
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	1.7	0.8420
AT4G00440			Protein of unknown function (D...		Lus10014776 [exp]	2.8	0.8201
					Lus10008758 [exp]	8.2	0.7313
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10025054 [exp]	9.6	0.7151
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	12.6	0.7500
AT2G28310			Protein of unknown function (D...		Lus10000145 [exp]	18.3	0.6984
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	30.4	0.7264
					Lus10007413 [exp]	33.5	0.6966
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	34.3	0.7283

Compare expression of checked genes

Lus10007444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.