Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31805 65 / 2e-11 WRKY family transcription factor (.1) AT5G10890 44 / 0.0001 myosin heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024451 [exp] 498 / 3e-176 AT4G31805 121 / 5e-31 WRKY family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G019400 [exp] 102 / 4e-24 AT4G31805 84 / 8e-18 WRKY family transcription factor (.1) Potri.006G263800 [exp] 52 / 5e-07 AT4G31805 93 / 2e-21 WRKY family transcription factor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10007445 pacid=23178409 polypeptide=Lus10007445 locus=Lus10007445.g ID=Lus10007445.BGIv1.0 annot-version=v1.0 ATGGCAATCACCACCACTCCTCCACTTGACCACCCTTCAGTTCCCAATAATTCCTCTTCCACTTCCGCCGCCGCCTCGCATCGTCGGTTGCGTATCTCCG ACATCCTAGCCTCTCCTCTCGACGACGAAGACGACCGACCGGAAGAAGAGGCTTTCCTAATCCGCCGCCGCAGTTTGGTTGTCATGGGTGAAGGTAATTT TCTCCAGGGTCGTCATCGCAATAGTAGTAGCTCCTACCATTGTTCGTCCCCTTGCCGGGTTGTCTCCCGGTGGTTGTCATGGATGAAACGGTCTAAGACC AAAAGAATTTCCGGCAAATGCTCCAGAATTGAAGTCGGTAGTAGGGCTGAGGCGGAAGGGTGTAAAGATTTGACCGCAGTCGTGATGCAGCCTAGGTATT CGATGAAAGTTCTCAACGATGGCTCTTCGGAGGAGAACGCTTCAGGGGATTCCAGTAGGAAGGAGGTTTCTTTGAACGCTGGGATCGGATGTTATCTTCT CTACTTAGTAGCGGCGACGAGAAATGAGCTTGACAGGATCAACGCCGCGCGAGTGGAAATGGAGACTCTTCTACAGAATACCAAACGGCAGCGGCGGAGG AGGAGCGCAGACAGAGATGACAATGATGATATTCTGTTTGATTTTTCAGCCGGAAAAGTTAAAGAGCATCATCATGAGTTGGAGCCCCAAGTCTCTACGG AGCTTCATATGAATAATTCTTATGCTTTGCCAGCTTCCTCAGGTAGCCAAGAGTCCATCAACTGCGAAATTTCGAAAAGGGAAGAGTGTACAGAAGACAT GAAACATCTAGAGGTGGAACTTGAAGCTGAGCTCCAACTTTTGCAGCTCCAATTGGATCGAGACAAGTTCATGGAATGTTCACAGCTTCAAAGGGTGAGA AATGAGGAGGCGAGTAGTAGTATATCTTCGAGAACGTACAGCATGATTTCATCAGAAGAAGAAGAAGAAGGAGAAGTGATTGTTTGTGATCCAGAGCAGG GGGAGGAAAGTCATGGTGGGTTTTCTCCATATGAATTGGAAAGGAGGCTGCACCAAGTGCTTGAGTCAAGACAGGAAGAGGAAATCAGGGAGCTGGAGGC TGCTTTAGAAAGTATGAAGCAGAAGTTTCAAGTGAAGGAGATGGAGGTTTCTTGGTGGAAAGCTGCGGCAGCAAGAAGTGGAGGAGGGCTTCATTGTCCA GAGTGA
AA sequence Show only first row Show all	>Lus10007445 pacid=23178409 polypeptide=Lus10007445 locus=Lus10007445.g ID=Lus10007445.BGIv1.0 annot-version=v1.0 MAITTTPPLDHPSVPNNSSSTSAAASHRRLRISDILASPLDDEDDRPEEEAFLIRRRSLVVMGEGNFLQGRHRNSSSSYHCSSPCRVVSRWLSWMKRSKT KRISGKCSRIEVGSRAEAEGCKDLTAVVMQPRYSMKVLNDGSSEENASGDSSRKEVSLNAGIGCYLLYLVAATRNELDRINAARVEMETLLQNTKRQRRR RSADRDDNDDILFDFSAGKVKEHHHELEPQVSTELHMNNSYALPASSGSQESINCEISKREECTEDMKHLEVELEAELQLLQLQLDRDKFMECSQLQRVR NEEASSSISSRTYSMISSEEEEEGEVIVCDPEQGEESHGGFSPYELERRLHQVLESRQEEEIRELEAALESMKQKFQVKEMEVSWWKAAAARSGGGLHCP E

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31805			WRKY family transcription fact...		Lus10007445 [exp]	0	1
AT4G31805			WRKY family transcription fact...		Lus10024451 [exp]	2.0	0.8972
AT5G06440			unknown protein		Lus10029361 [exp]	2.6	0.8683
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	3.5	0.9023
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	8.5	0.8460
					Lus10037345 [exp]	10.5	0.8297
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	15.1	0.8738
AT5G48340			unknown protein		Lus10041085 [exp]	17.6	0.8923
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003892 [exp]	21.2	0.8346
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10016885 [exp]	29.7	0.8640
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	31.0	0.8710

Compare expression of checked genes

Lus10007445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.