Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17670 234 / 9e-78 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT1G62740 61 / 1e-10 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G11260 48 / 3e-06 RPR1, ETA3, EDM1, ATSGT1B, SGT1B ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) AT1G04190 48 / 3e-06 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G23570 45 / 2e-05 SGT1A phosphatase-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032305 [exp] 47 / 5e-06 AT4G11260 417 / 9e-147 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10041189 [exp] 44 / 4e-05 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024680 [exp] 44 / 9e-05 AT4G11260 459 / 2e-162 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10021905 [exp] 42 / 0.0003 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012059 [exp] 42 / 0.0003 AT2G15790 596 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10027540 [exp] 41 / 0.0004 AT4G11260 412 / 2e-144 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10039297 [exp] 41 / 0.0007 AT4G11260 409 / 5e-143 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G029700 [exp] 283 / 2e-96 AT3G17670 226 / 7e-74 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.008G156500 [exp] 52 / 1e-07 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G082900 [exp] 47 / 3e-06 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G106200 [exp] 45 / 2e-05 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.005G054800 [exp] 44 / 4e-05 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.005G135500 [exp] 43 / 8e-05 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.004G144300 [exp] 43 / 9e-05 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10007446 pacid=23178403 polypeptide=Lus10007446 locus=Lus10007446.g ID=Lus10007446.BGIv1.0 annot-version=v1.0 ATGTCCAGAGCAGCACAGTTCCTCTATGGTTACTCTCATCCTTCTCCATCGCCACTTCCTACTCCCCAACAATCATCCTCCTTGTCCTCCGCTGGCTCTC GCACCCGCAGTTGCGTTCGTGCGGAAACGAACGAAATCCGCGTTTGCACTAACCGGACCTGCCGCAAACAAGGCTCCTTCGAAACCCTAGACCTCCTCAC CGGAATCGCCCCGCCTAGCGTCGTCGTCAACCGCTGCGGCTGCTTGGGGAGCTGCGGCTCCGGCCCCAATGTCGTCATCTTACCCCAAGGCGTGATCCGG TATCATTGCGGTACTGCTTCCCGTGCTGCACTCTTGATGTCCGAAGCTGTTGGCGTGGACTCCGCCACCGTCGAAAGCTCACTGGAGGCCCTTGCTCTTA GGAAGAGGGCCGTATTGGAAATCGAGAAAGGCGATTTTGCTGCAGCCGAGCTCTTGCTCTCCCGGGCTATCGATTTGAAACCATTTGGTGGTCTTCACAT TATGCATAAATTCAGGTCTTCTGCAAGATTGGCGATGGGTGACTACACAGGGGCCCTTGCAGATGCTCGAGAAGCTTTAGAACAAGCTCCCGAATATGCT GAGGCTTATTTGTGCGAAGGTGATGCTTTCATGGCAATGGAACAATATGATGCAGCTGAGAAATCCTACTCGATTTGCTTGCAGATAGATCCTTCAATGC GTCGTTCTAAGCCATTCAAGGTATGTCCTTGA
AA sequence Show only first row Show all	>Lus10007446 pacid=23178403 polypeptide=Lus10007446 locus=Lus10007446.g ID=Lus10007446.BGIv1.0 annot-version=v1.0 MSRAAQFLYGYSHPSPSPLPTPQQSSSLSSAGSRTRSCVRAETNEIRVCTNRTCRKQGSFETLDLLTGIAPPSVVVNRCGCLGSCGSGPNVVILPQGVIR YHCGTASRAALLMSEAVGVDSATVESSLEALALRKRAVLEIEKGDFAAAELLLSRAIDLKPFGGLHIMHKFRSSARLAMGDYTGALADAREALEQAPEYA EAYLCEGDAFMAMEQYDAAEKSYSICLQIDPSMRRSKPFKVCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17670			tetratricopeptide repeat (TPR)...		Lus10007446 [exp]	0	1
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10012360 [exp]	1.7	0.8890
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10014746 [exp]	5.5	0.7914
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Lus10032769 [exp]	6.5	0.8317
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10043237 [exp]	9.2	0.7897
AT1G53440			Leucine-rich repeat transmembr...		Lus10042505 [exp]	10.6	0.8237
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10012713 [exp]	11.2	0.8162
AT3G03550			RING/U-box superfamily protein...		Lus10035677 [exp]	11.5	0.7875
AT5G51010			Rubredoxin-like superfamily pr...		Lus10016735 [exp]	14.1	0.8353
AT5G52030			TraB family protein (.1.2)		Lus10038884 [exp]	14.4	0.8521
AT3G03550			RING/U-box superfamily protein...		Lus10037264 [exp]	15.2	0.7851

Compare expression of checked genes

Lus10007446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.