Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25050 517 / 6e-164 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT3G32400 476 / 3e-156 Actin-binding FH2/DRF autoregulatory protein (.1) AT5G58160 457 / 7e-140 actin binding (.1) AT1G31810 456 / 8e-140 AFH14 Formin Homology 14 (.1) AT5G07740 436 / 4e-130 actin binding (.1) AT5G07770 352 / 1e-106 Actin-binding FH2 protein (.1.2) AT5G07650 345 / 7e-103 Actin-binding FH2 protein (.1) AT5G07760 330 / 2e-97 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT5G07780 317 / 8e-97 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G42980 167 / 1e-45 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024450 [exp] 1707 / 0 AT5G58160 600 / 0.0 actin binding (.1) Lus10035830 [exp] 505 / 3e-157 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 504 / 1e-155 AT5G58160 608 / 0.0 actin binding (.1) Lus10023804 [exp] 461 / 4e-141 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10003956 [exp] 456 / 2e-139 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10015724 [exp] 440 / 2e-134 AT5G07740 723 / 0.0 actin binding (.1) Lus10003482 [exp] 367 / 9e-107 AT5G07740 714 / 0.0 actin binding (.1) Lus10017556 [exp] 158 / 6e-42 AT5G07740 392 / 1e-124 actin binding (.1) Lus10015725 [exp] 110 / 5e-27 AT5G07740 282 / 6e-88 actin binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G019600 [exp] 564 / 1e-178 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.006G263700 [exp] 548 / 5e-173 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.006G185601 [exp] 523 / 3e-172 AT5G58160 603 / 0.0 actin binding (.1) Potri.018G108000 [exp] 520 / 2e-164 AT5G58160 600 / 0.0 actin binding (.1) Potri.003G103800 [exp] 479 / 2e-147 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.012G067900 [exp] 462 / 5e-141 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 455 / 7e-138 AT5G07740 722 / 0.0 actin binding (.1) Potri.006G185501 [exp] 281 / 3e-83 AT5G58160 598 / 0.0 actin binding (.1) Potri.005G026300 [exp] 102 / 7e-22 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.014G174700 [exp] 102 / 2e-21 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF10409 [flax] [poplar] PTEN_C2 C2 domain of PTEN tumour-suppressor protein CL0154 [flax] [poplar] PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10007447 pacid=23178394 polypeptide=Lus10007447 locus=Lus10007447.g ID=Lus10007447.BGIv1.0 annot-version=v1.0 ATGGCTCTGTTAAACAAGTTCAATACCCACACTTCTACTCTCTTGGAGATCTCTGAAAGGGTTTATGTTTTGGACAGCTGTTTTGGAACTGATGAAGAAG ATGATAAAAAACTTCACACGAGTAGAAGCATTGTGGATCATCAGCAGCTTAAACACAACTTTCCTGAATCTTGCTCTTTCATGGTGTTTAGCTTCTGGGA CAAGGGAAACATGGCTGCTAGCCTCTTGTCTGAATCCGACAACATGACTGTGGTGGAATACTATCCATCTTATTACGCAGGTTGTCCTTTACCCCCAATG CATATGATCCATCATTTCCTTAATTCCGCACAGACCTGGTTATCTGCTGGACAACACAATCTCCTTTTGATTCACTGGGAGCCTTGTGGTTGGCCCGCTA TGGCTTTCCTGCTTGCCGCTCTCCTCATACATAGGAAGCAGCAAATGCAATCCACCTCAGACCATCCCCGGACTTTACAATCGATATATGAGCAAGCGCC TCGAGAGCTGTTGTTGTTGGCAAGTGGATCCATTGGTCCGCTACCTTCACAGCTCCGGTATCTAGAGTATGTGTCCAGGAATGTGGGGTATCAGTTACCT CCTCCATTAAATAGAACACTTGGACTGGATTGCATTGTTCTAACACTTGCTCCAAACATGGACAGCAGGCCAGCGTTCAGGATAATGGGTCCTGGCCCTT TTAACGAAGATGCGGATCAGGCTCCGAAACTTCTGTTTGGGAGCCAGCATTACGACAAGGCAGATTGCCAAGTTGTGAAGGTTGATACTGATTGCAATGT GGAATGTGATGTTGTGATGGAGTGTGTTAGCTTGGACAATGTTAAGGAAAGAAAGGACGTCATTATGTTCAGGGTTATGTTTCATACAGCTTTTATAAGC TCAAAGGTTTTGGTTCTTACTCAAGAACAGATTGATACATTACGGAACTTTGATAAGTTACCTAACGACTTCAGAGTAGAGGTTATGTTCTCAGAGATGG AGGCTGCTGCTCCTCTTGCTGCTCCCACTGATTTAGTTATTAAAGAGAATAAAGAATCCCATCATCCTAAGGCATCATATGTCACCGATCAGGACGAATC CAATGATGTTGGTTCCATCGATACAGCGATGCAATCTAAGAGTCCAGAACCGCTTCATGATGCACCTCAGACAGTGTTGTCTAGTGAGCCACCTTTAGAT GCAAAGTCAGAAGAAGCATCATCTTCTTCGGAGACTAATTTACAAGGGAAGGGTAATGAACAACATGGGCTGTGTGTGTCAATCAAAGTGCCTGTTACTG CATCAAAGATCATAACCCCTAGAATTCTTCAAACTCCAGCTACTAATCTCCCGCAAGGATCGTCAATTACTGTGTCGAGATATCCTAATGCAGCCGCCTT TTCAGGCCTTGGTATTACAGCATTGTTACACGATCATGCTTCTTCGCCTACTACTCTTGAATGTCCACGTTCGGTCACTTTGAGTCCAACTGTTGTGTCC TCTCAAGTTACAAATGTGGGTCAATTTGTGAAGCAATCTCCACCGTCCTCCCAATCTGTTGTTGAAGCATCTGAATGTACAGACAAAGCTTCTGCAGCTC CTGCTCTATCAACTCTAAATGCAACTGATGAGTCGTCCACTGAACATTCTGAACCTCCATTAAGAAAACTTAAGAAATTTCCAGTACCCCCTCCTCCACC TTTACCTCCTTTCCTTTCAAATGCATATAGATCACCTTTGGTTAAGTTTTCACCCCCAGCACCACCCCCTCCTCCACCACTACCTTCAGTTTCTAAAGCA TTCATAAGAAAACCAACCAGTAAAACTCTCAGCCCCACTCTCCTTCCTCCTTTACCTGCTTTACGTTCGTCTCCATTTAAGCAATCGGTAACTCCTCCTG CTCCACCACCACCACCACTTTCTCTTTGGAAAGCATCCAGTCAAAAGACAGTTGCTTTCCCAACTTCTAACACTGGAAGGAGCCTTTCTCCTTCAGCTAA GCATGTTGTTTCCAGTAAATTAGATAACTCTTCTCAGCCTTTCAAGAGCTTGGCAGTCATCTCTAGACCTTGTCTGCATCCTCTGTCAGTTCCATTACCA CCCATTCCTCCTCCTATTTCTGCACTGAAGAAACAAAATAATATATCTATCAATTCTGAAGATGTTCCTTCAATTCCACAACCACCACCTGCTCCTTCTG CAAAGGGATTAATAAAACCTAGCTTTGGCGTCAGGAATGTGCCTCCTCCAGCACCAGGGCCACCTTCACTTTCATCTTTCGGGGGAAAGGACCGACGCTC AAGAAACCAGGTGCAAGCTAGAAAGGCTAGCCTGAAGCCATATCATTGGTTGAAATTGACAAGAGTCACTCAAGGAAGTATATGGGCCGAGGCTCAGAAG TCCAGTGACACCTCCATGACTCCTGAATTTGATATCTCTGAACTTGAGAGCCTGTTTTCATCAACTAGTCTAAATTCTGATATGAAAAGCACTGGAGTTA AATCAAAGCGCCGCACCTCGGTACTCAAAACTGACAAAGTTCAACTGATTGAGCTCAGACGTGCATATAACTGCGAGATCATGCTTACAAAAGTTAAAAT CCCTCTGCATGAGCTGGCAAGTTCAGTCCTTGCTTTGGATGATTCAGTATTGGATGTGGATCAAGTCGATAGGCTTGTTAAATTTTGCCCCACGAAAGAA GAGATGGAATTGCTCAAGGGTTATAAAGGAGACAAGGAAAGCTTGGGAAAATGTGAACAGTTCTTCTTGGAGTTAATGAAAGTGCCACGTGTACAGTCAA AGTTAAGGGTGTTCTCGTTCAAGATGCAGTTCTCTCAGCAGGTCTCTGACCTGAGGAGAAACTTGAATGTTGTGAATTCAGCGGCTGAAGAGGCATGTCA TATCTACATCAGAAGCTCAACAAAGTTCAAAAGGATCATGCAGTCTGTTCTATCCCTTGGAAATGCCTTGAACCAAGGAACTGCAAGGGGTTCTGCTGTT GGTTTTCGACTGGACAGTCTACTCAAACTCACAGATACAAGATCTAGGAACAATAAGATAACTCTCATGCATTATCTTTGCAAGGTACTTGCTGAACAGT TGCCAGAAGTACTGGACTTCTCCAAAGACCTAATGAACTTGGAGGCTGCAACAAAAATTCAACTGAAGTATCTAGCTGAGGAGATGCAAGCCATTAGCAA AGGTCTGGAGAAAGTGATACAGGAGTTGGCTGCCTCAGAGAATGATGGTGCAGTGTCGGAATACTTCTGTAAGATCCTGAGAGCATTCTTGAGTTCTGCA GAAAGTGAAGTGAAATCCTTGGCGTCGCTCTATTCAAATGTCGGTAGAAATGCAGATGCATTAGCTCTATATTTTGGTGAAGATCCAACGCGCTGCCCAT TTGAGCAAGTTGTCTCTACTCTGCTCAACTTTGCGAGAATGTTGGTGCGGGCGCGCGAAGAAAACTGCAAGCGAGTTGAATACGAAAAGAGAAAGGCAGA GAAAGAAGCTGAGAAGCAAAGAATGTTGTTGGACGTTGGTGGTGGTGGGGATTCACAAAGGGGGCCTGTAATGTTTCATGCTATCAGGAGTAGGTATATC AGATGA
AA sequence Show only first row Show all	>Lus10007447 pacid=23178394 polypeptide=Lus10007447 locus=Lus10007447.g ID=Lus10007447.BGIv1.0 annot-version=v1.0 MALLNKFNTHTSTLLEISERVYVLDSCFGTDEEDDKKLHTSRSIVDHQQLKHNFPESCSFMVFSFWDKGNMAASLLSESDNMTVVEYYPSYYAGCPLPPM HMIHHFLNSAQTWLSAGQHNLLLIHWEPCGWPAMAFLLAALLIHRKQQMQSTSDHPRTLQSIYEQAPRELLLLASGSIGPLPSQLRYLEYVSRNVGYQLP PPLNRTLGLDCIVLTLAPNMDSRPAFRIMGPGPFNEDADQAPKLLFGSQHYDKADCQVVKVDTDCNVECDVVMECVSLDNVKERKDVIMFRVMFHTAFIS SKVLVLTQEQIDTLRNFDKLPNDFRVEVMFSEMEAAAPLAAPTDLVIKENKESHHPKASYVTDQDESNDVGSIDTAMQSKSPEPLHDAPQTVLSSEPPLD AKSEEASSSSETNLQGKGNEQHGLCVSIKVPVTASKIITPRILQTPATNLPQGSSITVSRYPNAAAFSGLGITALLHDHASSPTTLECPRSVTLSPTVVS SQVTNVGQFVKQSPPSSQSVVEASECTDKASAAPALSTLNATDESSTEHSEPPLRKLKKFPVPPPPPLPPFLSNAYRSPLVKFSPPAPPPPPPLPSVSKA FIRKPTSKTLSPTLLPPLPALRSSPFKQSVTPPAPPPPPLSLWKASSQKTVAFPTSNTGRSLSPSAKHVVSSKLDNSSQPFKSLAVISRPCLHPLSVPLP PIPPPISALKKQNNISINSEDVPSIPQPPPAPSAKGLIKPSFGVRNVPPPAPGPPSLSSFGGKDRRSRNQVQARKASLKPYHWLKLTRVTQGSIWAEAQK SSDTSMTPEFDISELESLFSSTSLNSDMKSTGVKSKRRTSVLKTDKVQLIELRRAYNCEIMLTKVKIPLHELASSVLALDDSVLDVDQVDRLVKFCPTKE EMELLKGYKGDKESLGKCEQFFLELMKVPRVQSKLRVFSFKMQFSQQVSDLRRNLNVVNSAAEEACHIYIRSSTKFKRIMQSVLSLGNALNQGTARGSAV GFRLDSLLKLTDTRSRNNKITLMHYLCKVLAEQLPEVLDFSKDLMNLEAATKIQLKYLAEEMQAISKGLEKVIQELAASENDGAVSEYFCKILRAFLSSA ESEVKSLASLYSNVGRNADALALYFGEDPTRCPFEQVVSTLLNFARMLVRAREENCKRVEYEKRKAEKEAEKQRMLLDVGGGGDSQRGPVMFHAIRSRYI R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58160			actin binding (.1)		Lus10007447 [exp]	0	1
AT5G50150			Protein of Unknown Function (D...		Lus10027683 [exp]	2.4	0.8620
AT5G50150			Protein of Unknown Function (D...		Lus10039949 [exp]	3.9	0.8763
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	4.9	0.8457
AT5G62550			unknown protein		Lus10024245 [exp]	4.9	0.8478
AT5G58160			actin binding (.1)		Lus10024450 [exp]	6.0	0.8271
AT3G48210			unknown protein		Lus10018093 [exp]	6.5	0.8376
AT4G28040			nodulin MtN21 /EamA-like trans...		Lus10019969 [exp]	7.5	0.8327
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10040595 [exp]	9.2	0.8173
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10025873 [exp]	9.2	0.8434
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10025272 [exp]	12.2	0.8414

Compare expression of checked genes

Lus10007447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.